Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 0.0e+00 1107.8 558 100.0
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.4e-288 995.7 560 91.6
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.0e-278 963.0 546 89.0
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 4.4e-274 947.6 549 88.9
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.4e-259 899.4 554 82.3
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 5.7e-258 894.0 555 81.1
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.3e-257 892.9 560 80.4
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 3.1e-256 888.3 560 80.0
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 4.1e-256 887.9 553 79.9
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 7.0e-256 887.1 551 81.1
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 7.2e-253 877.1 560 79.3
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 9.4e-253 876.7 559 79.8
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 5.2e-227 791.2 557 70.2
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 3.4e-226 788.5 543 72.0
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 5.8e-226 787.7 561 70.2
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 9.8e-226 786.9 552 71.4
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.2e-225 785.8 533 72.6
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.9e-225 785.4 530 72.5
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 3.7e-225 785.0 542 71.8
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 3.7e-225 785.0 561 70.4
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 6.4e-225 784.3 553 70.9
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 8.3e-225 783.9 560 69.1
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 8.3e-225 783.9 549 71.9
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 2.4e-224 782.3 550 71.8
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 7.0e-224 780.8 561 69.7
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.5e-223 778.5 519 73.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.0e-222 776.9 561 69.0
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.3e-222 776.5 550 71.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 3.0e-222 775.4 543 70.5
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 7.3e-221 770.8 559 69.2
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.8e-219 766.1 548 70.4
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 5.2e-219 764.6 554 69.1
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 6.8e-219 764.2 575 67.5
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 2.0e-218 762.7 545 70.1
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 9.9e-218 760.4 544 69.3
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.7e-217 759.6 546 69.6
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 2.9e-217 758.8 516 72.1
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 2.9e-217 758.8 554 69.7
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 2.9e-217 758.8 545 69.4
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 3.7e-217 758.4 514 72.4
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-216 756.9 529 70.1
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.1e-216 756.9 520 72.3
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.4e-216 756.5 550 68.4
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 5.4e-216 754.6 532 70.3
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 9.2e-216 753.8 512 71.9
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 9.2e-216 753.8 549 68.3
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 9.2e-216 753.8 514 72.0
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.2e-215 753.4 547 69.3
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.2e-215 753.4 514 72.0
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.6e-215 753.1 511 72.2
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 4.6e-215 751.5 546 68.9
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 1.0e-214 750.4 547 68.4
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.3e-214 750.0 537 70.6
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.1e-214 748.0 527 70.0
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 6.6e-214 747.7 540 69.1
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 6.6e-214 747.7 528 69.3
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.1e-213 746.9 508 72.0
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.1e-213 746.9 529 70.1
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.1e-213 746.9 538 69.3
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.5e-213 746.5 530 70.4
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 1.9e-213 746.1 545 68.6
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.5e-213 745.7 552 67.8
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 2.5e-213 745.7 531 69.9
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 4.3e-213 745.0 519 70.9
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 5.6e-213 744.6 542 68.1
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 5.6e-213 744.6 514 71.0
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 9.5e-213 743.8 491 73.3
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.6e-212 743.0 578 65.6
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 6.2e-212 741.1 461 77.4
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 2.4e-211 739.2 525 69.7
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 3.1e-211 738.8 547 68.2
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 6.8e-211 737.6 521 70.4
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 6.8e-211 737.6 546 69.2
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 9.9e-210 733.8 504 71.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 3.8e-209 731.9 520 70.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 6.4e-209 731.1 533 69.0
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.1e-207 726.1 475 74.7
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 2.1e-207 726.1 454 76.0
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 1.7e-206 723.0 478 73.8
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 3.0e-206 722.2 488 73.6
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 6.6e-206 721.1 526 68.3
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.6e-206 721.1 529 67.7
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 8.7e-206 720.7 542 67.2
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.3e-204 716.8 489 72.2
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 2.1e-204 716.1 642 60.0
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 2.0e-202 709.5 423 79.2
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.3e-201 706.8 560 65.4
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 3.8e-201 705.3 521 67.4
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 4.9e-201 704.9 510 69.0
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 1.1e-200 703.7 466 72.7
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 5.4e-200 701.4 459 72.8
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.7e-199 699.1 512 68.2
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.7e-199 699.1 516 68.0
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 1.7e-198 696.4 534 66.7
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.5e-197 693.3 458 72.5
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 2.5e-197 692.6 537 67.0
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.3e-182 643.7 374 82.6
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 9.0e-179 630.9 548 61.7
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 9.3e-176 620.9 524 60.5
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.5e-173 613.6 421 71.0
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 4.5e-162 575.5 381 75.1
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 8.5e-153 544.7 440 58.9
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 3.6e-151 539.3 434 60.4
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 6.3e-148 528.5 415 63.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.1e-147 527.7 416 65.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.3e-145 520.8 437 58.8
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 5.2e-134 482.3 441 53.3
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.6e-114 417.5 488 45.3
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 2.8e-111 406.8 522 46.9
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.3e-108 397.9 481 46.4
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.4e-107 393.7 519 45.7
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.1e-104 384.8 514 45.1
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 4.3e-104 382.9 454 48.2
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.2e-103 379.0 541 44.9
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 6.2e-103 379.0 520 44.6
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.1e-102 378.3 483 44.3
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.8e-98 362.1 552 42.6
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.0e-97 361.7 248 72.2
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.2e-82 311.6 176 84.7
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 3.6e-79 300.1 169 89.3
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 4.8e-79 299.7 477 37.3
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.4e-51 208.4 160 70.0
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 6.9e-46 189.5 202 54.0
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.8e-38 164.9 138 61.6
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.5e-35 153.3 131 58.8
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.4e-30 138.7 83 80.7
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 9.1e-30 136.0 105 65.7
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.3e-25 121.3 141 48.2
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 2.2e-20 104.8 104 55.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.8e-17 95.1 58 75.9
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 7.0e-14 83.2 115 42.6
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 5.9e-13 80.1 123 42.3
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 5.6e-11 73.6 115 38.3
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 1.0e-09 69.3 117 38.5
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.2e-07 61.6 38 73.7
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 2.2e-07 61.6 130 40.8


User provided reference genes

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