Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28036 Trifolium pratense HOM05D000386 ORTHO05D411918 5.6e-33 143.7 72 100.0
TPR.G13747 Trifolium pratense HOM05D000386 ORTHO05D000406 5.7e-17 90.5 46 95.7
Glyma.11G093900 Glycine max HOM05D000386 ORTHO05D000406 4.1e-15 84.3 46 89.1
VMungo1127G0277 Vigna mungo HOM05D000386 ORTHO05D000406 4.1e-15 84.3 46 89.1
Ca_18975_v3 Cicer arietinum L. HOM05D000386 ORTHO05D000406 5.3e-15 84.0 46 87.0
Ca_30869_v3 Cicer arietinum L. HOM05D000386 ORTHO05D000406 5.3e-15 84.0 46 87.0
arahy.Tifrunner.gnm1.ann1.01D1MQ Arachis hypogaea HOM05D000386 ORTHO05D000406 3.4e-14 81.3 45 86.7
arahy.Tifrunner.gnm1.ann1.0PE7XW Arachis hypogaea HOM05D000386 ORTHO05D000406 3.4e-14 81.3 45 86.7
Glyma.12G020400 Glycine max HOM05D000386 ORTHO05D000406 3.4e-14 81.3 46 87.0
Lj3g0025257 Lotus japonicus HOM05D000386 ORTHO05D000406 5.9e-14 80.5 46 84.8
Phvul.011G023100 Phaseolus vulgaris HOM05D000386 ORTHO05D000406 1.7e-13 79.0 45 86.7
Lalb_Chr01g0001061 Lupinus albus HOM05D000386 ORTHO05D000406 6.5e-13 77.0 46 82.6
Lalb_Chr03g0024501 Lupinus albus HOM05D000386 ORTHO05D000406 6.5e-13 77.0 46 82.6
FvH4_3g28460 Fragaria vesca HOM05D000386 ORTHO05D000406 1.1e-12 76.3 46 78.3
FAN11G3056 Fragaria x ananassa HOM05D000386 ORTHO05D000406 1.1e-12 76.3 46 78.3
FAN16G1296 Fragaria x ananassa HOM05D000386 ORTHO05D000406 1.1e-12 76.3 46 78.3
FAN21G3090 Fragaria x ananassa HOM05D000386 ORTHO05D000406 1.1e-12 76.3 46 78.3
RcHm_v2.0_Chr5g0053001 Rosa chinensis HOM05D000386 ORTHO05D000406 3.2e-12 74.7 46 78.3
Prupe.4G254600 Prunus persica HOM05D000386 ORTHO05D000406 5.5e-12 73.9 46 76.1
CiPaw.13G155200 Carya illinoinensis HOM05D000386 ORTHO05D000406 1.6e-11 72.4 46 73.9
CiPaw.13G157200 Carya illinoinensis HOM05D000386 ORTHO05D000406 1.6e-11 72.4 46 73.9
Manes.14G004100 Manihot esculenta HOM05D000386 ORTHO05D000406 2.7e-11 71.6 46 73.9
QL01p004186 Quercus lobata HOM05D000386 ORTHO05D000406 6.1e-11 70.5 46 73.9
CANSAT54G2230 Cannabis sativa HOM05D000386 ORTHO05D000406 1.4e-10 69.3 46 69.6
QL01p004176 Quercus lobata HOM05D000386 ORTHO05D000406 1.4e-10 69.3 46 69.6
Ciclev10014529m.g Citrus clementina HOM05D000386 ORTHO05D000406 2.3e-10 68.6 46 69.6
Medtr4g076900 Medicago truncatula HOM05D000386 ORTHO05D000406 2.3e-10 68.6 46 71.7
Thecc.09G237800 Theobroma cacao HOM05D000386 ORTHO05D000406 2.3e-10 68.6 46 76.1
Atru.chr3.2668 Acer truncatum HOM05D000386 ORTHO05D000406 3.0e-10 68.2 45 71.1
CiPaw.14G117200 Carya illinoinensis HOM05D000386 ORTHO05D000406 3.0e-10 68.2 46 69.6
MD03G1172200 Malus domestica HOM05D000386 ORTHO05D000406 3.0e-10 68.2 46 71.7
COL.COLO4_28768 Corchorus olitorius HOM05D000386 ORTHO05D000406 6.7e-10 67.0 46 73.9
COL.COLO4_28769 Corchorus olitorius HOM05D000386 ORTHO05D000406 6.7e-10 67.0 45 68.9
CSS0029105 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D000406 8.8e-10 66.6 46 67.4
ClCG02G023080 Citrullus lanatus HOM05D000386 ORTHO05D000406 8.8e-10 66.6 46 65.2
Medtr4g076940 Medicago truncatula HOM05D000386 ORTHO05D000406 1.1e-09 66.2 47 76.6
Thecc.09G238000 Theobroma cacao HOM05D000386 ORTHO05D000406 1.1e-09 66.2 45 71.1
CSS0021422 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D000406 1.5e-09 65.9 46 67.4
CSS0024001 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D000406 1.5e-09 65.9 46 67.4
Duzib168G0252 Durio zibethinus HOM05D000386 ORTHO05D000406 2.5e-09 65.1 46 69.6
Rhsim13G0217900 Rhododendron simsii HOM05D000386 ORTHO05D000406 2.5e-09 65.1 46 69.6
Ciclev10014463m.g Citrus clementina HOM05D000386 ORTHO05D000406 3.3e-09 64.7 48 66.7
MD11G1189900 Malus domestica HOM05D000386 ORTHO05D000406 3.3e-09 64.7 46 65.2
Cpa.g.sc84.30 Carica papaya HOM05D000386 ORTHO05D000406 4.3e-09 64.3 47 68.1
Cpa.g.sc84.32 Carica papaya HOM05D000386 ORTHO05D000406 5.7e-09 63.9 45 71.1
Manes.06G162400 Manihot esculenta HOM05D000386 ORTHO05D000406 5.7e-09 63.9 46 69.6
Sabra09G0037300 Salix brachista HOM05D000386 ORTHO05D000406 5.7e-09 63.9 45 66.7
MELO3C014580.2 Cucumis melo HOM05D000386 ORTHO05D000406 7.4e-09 63.5 45 62.2
CsaV3_6G039210 Cucumis sativus L. HOM05D000386 ORTHO05D000406 7.4e-09 63.5 45 62.2
Sed0003621 Sechium edule HOM05D000386 ORTHO05D000406 7.4e-09 63.5 46 63.0
GSVIVG01031529001 Vitis vinifera HOM05D000386 ORTHO05D000406 7.4e-09 63.5 46 65.2
Cfa009807 Carpinus fangiana HOM05D000386 ORTHO05D000406 9.7e-09 63.2 50 66.0
Duzib150G0585 Durio zibethinus HOM05D000386 ORTHO05D000406 9.7e-09 63.2 45 66.7
Eucgr.J00746 Eucalyptus grandis HOM05D000386 ORTHO05D000406 1.7e-08 62.4 46 65.2
Gohir.A09G112825 Gossypium hirsutum HOM05D000386 ORTHO05D016108 1.7e-08 62.4 46 67.4
Gohir.D09G109300 Gossypium hirsutum HOM05D000386 ORTHO05D000406 1.7e-08 62.4 46 67.4
Gorai.006G126900 Gossypium raimondii HOM05D000386 ORTHO05D000406 1.7e-08 62.4 46 67.4
Sc16g0011290 Simmondsia chinensis HOM05D000386 ORTHO05D000406 2.2e-08 62.0 46 67.4
unitig_62.g23884 Utricularia gibba HOM05D000386 ORTHO05D000406 2.2e-08 62.0 47 59.6
Eucgr.J00745 Eucalyptus grandis HOM05D000386 ORTHO05D000406 2.8e-08 61.6 46 65.2
Potri.009G051200 Populus trichocarpa HOM05D000386 ORTHO05D000406 2.8e-08 61.6 45 66.7
GSVIVG01031528001 Vitis vinifera HOM05D000386 ORTHO05D000406 3.7e-08 61.2 45 66.7
Cc01_g04960 Coffea canephora HOM05D000386 ORTHO05D000406 6.3e-08 60.5 45 64.4
Glyma.11G093800 Glycine max HOM05D000386 ORTHO05D000406 6.3e-08 60.5 46 58.7
MD03G1172300 Malus domestica HOM05D000386 ORTHO05D000406 6.3e-08 60.5 45 64.4
Phvul.011G023000 Phaseolus vulgaris HOM05D000386 ORTHO05D000406 6.3e-08 60.5 46 58.7
CiPaw.14G117100 Carya illinoinensis HOM05D000386 ORTHO05D000406 8.2e-08 60.1 45 66.7
FAN25G0510 Fragaria x ananassa HOM05D000386 ORTHO05D000406 8.2e-08 60.1 45 68.9
Potri.001G255800 Populus trichocarpa HOM05D000386 ORTHO05D000406 8.2e-08 60.1 45 64.4
Ca_18974_v3 Cicer arietinum L. HOM05D000386 ORTHO05D000406 1.1e-07 59.7 46 58.7
Ca_29678_v3 Cicer arietinum L. HOM05D000386 ORTHO05D000406 1.1e-07 59.7 46 58.7
Sabra16G0156400 Salix brachista HOM05D000386 ORTHO05D000406 1.1e-07 59.7 45 66.7
TWI32G0398 Tripterygium wilfordii HOM05D000386 ORTHO05D000406 1.1e-07 59.7 46 63.0
Actinidia16345 Actinidia chinensis HOM05D000386 ORTHO05D000406 1.4e-07 59.3 46 63.0
TPR.G13750 Trifolium pratense HOM05D000386 ORTHO05D000406 1.4e-07 59.3 46 56.5
Dinv22161 Davidia involucrata HOM05D000386 ORTHO05D000406 1.8e-07 58.9 37 73.0
TWI32G0487 Tripterygium wilfordii HOM05D000386 ORTHO05D000406 1.8e-07 58.9 46 60.9
VMungo1127G2176 Vigna mungo HOM05D000386 ORTHO05D000406 1.8e-07 58.9 45 57.8
Actinidia06922 Actinidia chinensis HOM05D000386 ORTHO05D000406 2.4e-07 58.5 46 63.0
FvH4_3g28480 Fragaria vesca HOM05D000386 ORTHO05D000406 2.4e-07 58.5 45 68.9
FAN11G1949 Fragaria x ananassa HOM05D000386 ORTHO05D000406 2.4e-07 58.5 45 68.9
FAN21G3305 Fragaria x ananassa HOM05D000386 ORTHO05D016108 2.4e-07 58.5 45 68.9
CSS0008095 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D000406 3.1e-07 58.2 45 62.2
Haze_23168 Corylus avellana HOM05D000386 ORTHO05D000406 3.1e-07 58.2 46 67.4
Haze_23171 Corylus avellana HOM05D000386 ORTHO05D000406 3.1e-07 58.2 46 67.4
Prupe.4G254300 Prunus persica HOM05D000386 ORTHO05D000406 3.1e-07 58.2 44 63.6
Glyma.12G020300 Glycine max HOM05D000386 ORTHO05D000406 4.1e-07 57.8 46 56.5
RcHm_v2.0_Chr5g0052971 Rosa chinensis HOM05D000386 ORTHO05D000406 4.1e-07 57.8 45 64.4
CANSAT54G0078 Cannabis sativa HOM05D000386 ORTHO05D000406 5.3e-07 57.4 43 62.8
Gohir.A05G069900 Gossypium hirsutum HOM05D000386 ORTHO05D000406 5.3e-07 57.4 46 60.9
Gohir.D05G072800 Gossypium hirsutum HOM05D000386 ORTHO05D000406 5.3e-07 57.4 46 60.9
Gorai.009G073800 Gossypium raimondii HOM05D000386 ORTHO05D000406 5.3e-07 57.4 46 60.9
Lj2C625T7 Lonicera japonica HOM05D000386 ORTHO05D000406 5.3e-07 57.4 46 58.7
VMungo0616G0001 Vigna mungo HOM05D000386 ORTHO05D000406 6.9e-07 57.0 46 54.3
VMungo1127G0050 Vigna mungo HOM05D000386 ORTHO05D000406 6.9e-07 57.0 46 54.3
Phvul.011G022900 Phaseolus vulgaris HOM05D000386 ORTHO05D000406 9.1e-07 56.6 45 57.8
TAR636G0498 Trochodendron aralioides HOM05D000386 ORTHO05D000406 9.1e-07 56.6 45 66.7
FAN16G3156 Fragaria x ananassa HOM05D000386 ORTHO05D000406 1.2e-06 56.2 45 66.7
Lj3g0002574 Lotus japonicus HOM05D000386 ORTHO05D000406 1.2e-06 56.2 45 55.6
Peaxi162Scf00004g03211 Petunia axillaris HOM05D000386 ORTHO05D000406 1.2e-06 56.2 45 60.0
SHI29799 Sapria himalayana HOM05D000386 ORTHO05D000406 1.2e-06 56.2 54 55.6
Migut.D00623 Erythranthe guttata HOM05D000386 ORTHO05D000406 1.5e-06 55.8 45 60.0
CAN.G717.5 Capsicum annuum HOM05D000386 ORTHO05D000406 2.0e-06 55.5 45 57.8
Lsat_1_v5_gn_6_25701 Lactuca sativa HOM05D000386 ORTHO05D000406 2.0e-06 55.5 45 57.8
TWI34G0387 Tripterygium wilfordii HOM05D000386 ORTHO05D000406 2.0e-06 55.5 47 59.6
TAR234G0002 Trochodendron aralioides HOM05D000386 ORTHO05D016108 2.0e-06 55.5 46 65.2
A06p02470 Brassica napus HOM05D000386 ORTHO05D000406 2.6e-06 55.1 46 56.5
BraA06t23453Z Brassica rapa HOM05D000386 ORTHO05D000406 2.6e-06 55.1 46 56.5
Lalb_Chr19g0139771 Lupinus albus HOM05D000386 ORTHO05D000406 2.6e-06 55.1 47 57.4
PGR119G1002 Punica granatum HOM05D000386 ORTHO05D000406 2.6e-06 55.1 46 60.9
Atru.chr3.2670 Acer truncatum HOM05D000386 ORTHO05D000406 3.4e-06 54.7 46 58.7
arahy.Tifrunner.gnm1.ann1.ZXB0FA Arachis hypogaea HOM05D000386 ORTHO05D000406 3.4e-06 54.7 46 56.5
DCAR_029966 Daucus carota HOM05D000386 ORTHO05D000406 3.4e-06 54.7 45 57.8
Sp1g38140 Schrenkiella parvula HOM05D000386 ORTHO05D000406 3.4e-06 54.7 48 60.4
Medtr4g076970 Medicago truncatula HOM05D000386 ORTHO05D000406 4.5e-06 54.3 46 52.2
THA.LOC104810245 Tarenaya hassleriana HOM05D000386 ORTHO05D000406 4.5e-06 54.3 46 56.5
arahy.Tifrunner.gnm1.ann1.7J7TZ0 Arachis hypogaea HOM05D000386 ORTHO05D000406 7.7e-06 53.5 46 54.3
Thhalv10011278m.g Eutrema salsugineum HOM05D000386 ORTHO05D000406 7.7e-06 53.5 48 58.3


User provided reference genes

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