Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 3.9e-108 394.8 200 100.0
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 6.7e-84 314.3 186 82.8
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.9e-83 312.8 190 84.7
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 7.4e-83 310.8 151 98.0
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 9.1e-81 303.9 175 85.1
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.7e-77 292.4 151 90.7
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 7.9e-77 290.8 151 90.7
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 7.9e-77 290.8 151 90.7
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.4e-76 290.0 151 88.1
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.1e-75 287.0 149 89.3
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.5e-75 286.6 151 91.4
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.6e-75 285.8 151 88.7
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.3e-71 273.5 151 84.1
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.5e-70 269.2 151 81.5
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.5e-70 269.2 151 81.5
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.6e-67 259.2 151 80.8
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 9.7e-67 257.3 151 80.1
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.2e-66 256.1 151 78.8
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 4.1e-65 251.9 151 78.1
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 7.0e-65 251.1 151 78.1
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 9.1e-65 250.8 151 78.1
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.2e-64 250.4 151 77.5
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.6e-64 250.0 151 77.5
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.0e-64 249.6 151 79.5
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 2.0e-64 249.6 151 77.5
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 5.9e-64 248.1 151 76.2
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 5.9e-64 248.1 151 75.5
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.0e-63 247.3 151 76.8
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.3e-63 246.9 170 68.8
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.3e-63 246.9 151 74.8
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.7e-63 246.5 151 76.2
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 3.8e-63 245.4 151 77.5
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 5.0e-63 245.0 154 77.3
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 5.0e-63 245.0 151 76.2
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 6.5e-63 244.6 151 76.8
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.1e-62 243.8 151 76.8
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-62 243.8 151 73.5
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-62 243.8 151 76.2
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.5e-62 243.4 151 76.2
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 1.9e-62 243.0 151 76.2
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.9e-62 243.0 151 76.8
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 1.9e-62 243.0 151 76.8
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.9e-62 243.0 151 76.8
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.9e-62 243.0 151 76.8
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.5e-62 242.7 151 74.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.5e-62 242.7 153 75.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 2.5e-62 242.7 151 75.5
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 3.2e-62 242.3 151 76.2
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 3.2e-62 242.3 153 75.2
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 4.2e-62 241.9 181 65.7
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 4.2e-62 241.9 179 65.4
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 4.2e-62 241.9 151 73.5
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 4.2e-62 241.9 151 75.5
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 4.2e-62 241.9 152 75.0
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 5.5e-62 241.5 151 76.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.5e-62 241.5 154 74.7
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.5e-62 241.5 154 74.7
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.5e-62 241.5 154 74.7
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 7.2e-62 241.1 151 76.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.2e-61 240.4 153 75.8
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.6e-61 240.0 151 76.2
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.6e-61 240.0 151 75.5
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 2.7e-61 239.2 151 74.2
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 3.6e-61 238.8 151 75.5
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 6.1e-61 238.0 151 73.5
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 6.1e-61 238.0 151 70.9
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 8.0e-61 237.7 156 75.6
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 8.0e-61 237.7 151 74.2
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.0e-60 237.3 151 74.2
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.0e-60 237.3 151 72.8
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.4e-60 236.9 151 74.2
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.8e-60 236.5 151 74.2
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.8e-60 236.5 151 74.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.8e-60 236.5 152 74.3
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.3e-60 236.1 151 74.8
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.3e-60 236.1 151 74.8
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.3e-60 236.1 151 74.8
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 3.0e-60 235.7 151 73.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 3.0e-60 235.7 151 73.5
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 3.0e-60 235.7 151 74.8
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.0e-60 235.3 152 73.7
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 4.0e-60 235.3 151 72.8
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.0e-60 235.3 177 66.7
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 4.0e-60 235.3 151 74.2
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 5.2e-60 235.0 151 72.8
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 5.2e-60 235.0 151 72.2
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 6.7e-60 234.6 151 70.9
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 6.7e-60 234.6 151 74.8
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 6.7e-60 234.6 151 74.8
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.8e-60 234.2 151 75.5
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 8.8e-60 234.2 181 65.2
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.8e-60 234.2 151 71.5
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.5e-59 233.4 151 73.5
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.0e-59 233.0 151 74.2
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.6e-59 232.6 151 70.9
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.6e-59 232.6 151 74.2
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.3e-59 232.3 151 71.5
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 3.3e-59 232.3 151 72.8
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 5.7e-59 231.5 151 73.5
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 7.5e-59 231.1 156 72.4
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.5e-59 231.1 151 74.2
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 9.7e-59 230.7 151 71.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.7e-58 229.9 145 74.5
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.7e-58 229.9 151 70.9
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.2e-58 229.6 151 70.2
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-58 229.6 176 64.8
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.2e-58 229.6 151 70.9
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.8e-58 229.2 153 69.9
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 4.8e-58 228.4 152 72.4
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.8e-58 228.4 151 70.9
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 4.8e-58 228.4 151 71.5
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 6.3e-58 228.0 153 71.2
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 6.3e-58 228.0 151 69.5
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 8.2e-58 227.6 151 71.5
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.8e-57 226.5 151 69.5
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 2.4e-57 226.1 152 69.7
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.1e-57 225.7 151 68.2
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 4.1e-57 225.3 151 70.2
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.6e-56 223.4 152 72.4
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.6e-56 223.4 151 68.9
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.5e-56 222.2 151 68.9
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.5e-56 222.2 151 67.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 5.9e-56 221.5 151 69.5
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 7.7e-56 221.1 152 69.7
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 7.7e-56 221.1 151 67.5
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.3e-55 220.3 151 70.9
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.7e-55 219.9 156 67.3
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.2e-55 219.5 151 66.9
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.2e-55 219.5 151 67.5
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 3.8e-55 218.8 151 68.9
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 5.0e-55 218.4 202 57.9
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.5e-55 217.6 169 66.3
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.9e-54 216.5 128 76.6
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 1.9e-54 216.5 152 67.8
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 2.5e-54 216.1 151 66.9
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.5e-54 216.1 153 68.6
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.0e-52 210.7 151 64.9
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.1e-49 200.7 154 63.6
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 7.7e-48 194.5 151 60.9
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 5.0e-47 191.8 128 65.6
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 8.6e-47 191.0 130 69.2
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 5.7e-43 178.3 153 60.1
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.7e-42 176.8 153 60.8
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.7e-42 175.6 152 59.2
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.1e-41 172.6 152 55.9
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 3.8e-39 165.6 113 83.2
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.5e-38 162.9 116 67.2
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 6.8e-36 154.8 151 49.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 7.5e-35 151.4 109 64.2
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.3e-31 140.6 105 66.7
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 6.2e-29 131.7 105 59.0
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.7e-26 122.5 55 100.0
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.5e-24 115.9 81 65.4
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-20 104.4 62 69.4
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 9.9e-19 97.8 72 65.3
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 9.9e-19 97.8 54 77.8
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 9.2e-17 91.3 50 80.0
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 9.2e-17 91.3 44 90.9
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 3.1e-12 76.3 42 81.0
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 2.2e-10 70.1 54 61.1
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-08 63.9 42 71.4
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.3e-07 60.8 80 46.2
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.3e-06 56.2 44 61.4


User provided reference genes

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