Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27982 Trifolium pratense HOM05D000018 ORTHO05D019588 1.3e-52 209.5 109 100.0
Medtr8g075890 Medicago truncatula HOM05D000018 ORTHO05D003948 4.8e-36 154.5 99 87.9
Ca_22375_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 8.2e-36 153.7 98 85.7
Medtr8g075830 Medicago truncatula HOM05D000018 ORTHO05D003948 1.2e-34 149.8 99 85.9
Lj4g0003068 Lotus japonicus HOM05D000018 ORTHO05D003948 4.5e-34 147.9 98 81.6
Phvul.003G261900 Phaseolus vulgaris HOM05D000018 ORTHO05D003948 1.3e-33 146.4 98 81.6
PGR119G2467 Punica granatum HOM05D000018 ORTHO05D003948 2.9e-33 145.2 98 80.6
Lj3g0023841 Lotus japonicus HOM05D000018 ORTHO05D003948 3.8e-33 144.8 98 80.6
GSVIVG01018781001 Vitis vinifera HOM05D000018 ORTHO05D003948 3.8e-33 144.8 98 79.6
Ca_22376_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 6.5e-33 144.1 100 81.0
QL06p032767 Quercus lobata HOM05D000018 ORTHO05D003948 1.5e-32 142.9 97 79.4
Ca_25823_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 2.5e-32 142.1 98 76.5
Potri.005G113900 Populus trichocarpa HOM05D000018 ORTHO05D003948 2.5e-32 142.1 98 80.6
Psat4g100080 Pisum sativum HOM05D000018 ORTHO05D003948 4.2e-32 141.4 99 84.8
TWI09G1391 Tripterygium wilfordii HOM05D000018 ORTHO05D003948 5.5e-32 141.0 98 76.5
Hma1.2p1_0956F.1_g241310 Hydrangea macrophylla HOM05D000018 ORTHO05D003948 1.2e-31 139.8 99 77.8
COL.COLO4_21907 Corchorus olitorius HOM05D000018 ORTHO05D003948 2.1e-31 139.0 100 77.0
Duzib264G0186 Durio zibethinus HOM05D000018 ORTHO05D003948 2.7e-31 138.7 99 78.8
Psat4g099840 Pisum sativum HOM05D000018 ORTHO05D003948 2.7e-31 138.7 98 78.6
Sabra05G0093200 Salix brachista HOM05D000018 ORTHO05D003948 2.7e-31 138.7 98 78.6
Actinidia30995 Actinidia chinensis HOM05D000018 ORTHO05D003948 3.6e-31 138.3 98 75.5
Psat4g099800 Pisum sativum HOM05D000018 ORTHO05D003948 3.6e-31 138.3 98 78.6
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 3.6e-31 138.3 99 75.8
Cc07_g10740 Coffea canephora HOM05D000018 ORTHO05D003948 4.7e-31 137.9 98 76.5
Duzib147G1489 Durio zibethinus HOM05D000018 ORTHO05D003948 8.0e-31 137.1 99 77.8
Eucgr.J02430 Eucalyptus grandis HOM05D000018 ORTHO05D003948 1.4e-30 136.3 99 75.8
Glyma.02G048600 Glycine max HOM05D000018 ORTHO05D003948 1.4e-30 136.3 108 75.0
VMungo0251G1315 Vigna mungo HOM05D000018 ORTHO05D003948 1.4e-30 136.3 98 76.5
Glyma.02G048400 Glycine max HOM05D000018 ORTHO05D003948 1.8e-30 136.0 108 74.1
Gorai.008G062900 Gossypium raimondii HOM05D000018 ORTHO05D003948 1.8e-30 136.0 102 76.5
Cpa.g.sc6.253 Carica papaya HOM05D000018 ORTHO05D003948 2.3e-30 135.6 98 76.5
arahy.Tifrunner.gnm1.ann1.HE8J5U Arachis hypogaea HOM05D000018 ORTHO05D003948 3.0e-30 135.2 99 74.7
Ah.03g148770 Amaranthus hybridus HOM05D000018 ORTHO05D003948 4.0e-30 134.8 100 76.0
Gohir.D12G059800 Gossypium hirsutum HOM05D000018 ORTHO05D003948 4.0e-30 134.8 102 75.5
Potri.005G113700 Populus trichocarpa HOM05D000018 ORTHO05D003948 5.2e-30 134.4 98 77.6
SHI08512 Sapria himalayana HOM05D000018 ORTHO05D003948 5.2e-30 134.4 98 74.5
Hund16491 Selenicereus undatus HOM05D000018 ORTHO05D003948 5.2e-30 134.4 99 76.8
Thecc.01G018700 Theobroma cacao HOM05D000018 ORTHO05D003948 5.2e-30 134.4 99 75.8
Glyma.16G128700 Glycine max HOM05D000018 ORTHO05D003948 6.8e-30 134.0 104 74.0
CiPaw.07G058600 Carya illinoinensis HOM05D000018 ORTHO05D003948 8.8e-30 133.7 101 78.2
Dinv33628 Davidia involucrata HOM05D000018 ORTHO05D003948 1.2e-29 133.3 99 75.8
Solyc02g083860.3 Solanum lycopersicum HOM05D000018 ORTHO05D003948 1.2e-29 133.3 98 75.5
Gohir.A12G059400 Gossypium hirsutum HOM05D000018 ORTHO05D003948 1.5e-29 132.9 102 74.5
Gohir.D11G182800 Gossypium hirsutum HOM05D000018 ORTHO05D003948 1.5e-29 132.9 98 74.5
Gorai.007G194700 Gossypium raimondii HOM05D000018 ORTHO05D003948 1.5e-29 132.9 98 74.5
vmacro18413 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 1.5e-29 132.9 98 73.5
arahy.Tifrunner.gnm1.ann1.79B99S Arachis hypogaea HOM05D000018 ORTHO05D003948 2.6e-29 132.1 99 73.7
COL.COLO4_32789 Corchorus olitorius HOM05D000018 ORTHO05D003948 3.4e-29 131.7 94 76.6
Gohir.A11G175300 Gossypium hirsutum HOM05D000018 ORTHO05D003948 3.4e-29 131.7 98 73.5
Peaxi162Scf00328g01214 Petunia axillaris HOM05D000018 ORTHO05D003948 3.4e-29 131.7 101 74.3
Rhsim08G0033600 Rhododendron simsii HOM05D000018 ORTHO05D003948 3.4e-29 131.7 98 74.5
Aqoxy2G02048 Aquilegia oxysepala HOM05D000018 ORTHO05D003948 4.4e-29 131.3 100 70.0
Sopen02g028650 Solanum pennellii HOM05D000018 ORTHO05D003948 4.4e-29 131.3 98 73.5
PGSC0003DMG400003563 Solanum tuberosum HOM05D000018 ORTHO05D003948 4.4e-29 131.3 98 75.5
Haze_03762 Corylus avellana HOM05D000018 ORTHO05D003948 7.5e-29 130.6 98 74.5
DCAR_009483 Daucus carota HOM05D000018 ORTHO05D003948 7.5e-29 130.6 101 73.3
Lalb_Chr19g0124151 Lupinus albus HOM05D000018 ORTHO05D003948 2.2e-28 129.0 98 71.4
Nitab4.5_0000864g0050 Nicotiana tabacum HOM05D000018 ORTHO05D003948 2.2e-28 129.0 101 72.3
Nitab4.5_0026775g0010 Nicotiana tabacum HOM05D000018 ORTHO05D003948 2.2e-28 129.0 100 70.0
CAN.G1274.2 Capsicum annuum HOM05D000018 ORTHO05D003948 2.8e-28 128.6 100 72.0
PGR102G0755 Punica granatum HOM05D000018 ORTHO05D003948 2.8e-28 128.6 101 71.3
MD15G1246200 Malus domestica HOM05D000018 ORTHO05D003948 3.7e-28 128.3 98 70.4
CSS0016177 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D003948 4.8e-28 127.9 102 70.6
Ciclev10025931m.g Citrus clementina HOM05D000018 ORTHO05D003948 4.8e-28 127.9 98 75.5
Actinidia37933 Actinidia chinensis HOM05D000018 ORTHO05D003948 6.3e-28 127.5 100 75.0
Manes.02G104700 Manihot esculenta HOM05D000018 ORTHO05D003948 8.3e-28 127.1 100 71.0
Dinv39519 Davidia involucrata HOM05D000018 ORTHO05D003948 1.1e-27 126.7 101 75.2
Nn1g05894 Nelumbo nucifera HOM05D000018 ORTHO05D003948 1.1e-27 126.7 100 71.0
RcHm_v2.0_Chr2g0099421 Rosa chinensis HOM05D000018 ORTHO05D003948 1.1e-27 126.7 98 71.4
AUR62029466 Chenopodium quinoa HOM05D000018 ORTHO05D003948 1.4e-27 126.3 100 71.0
THA.LOC104821327 Tarenaya hassleriana HOM05D000018 ORTHO05D003948 1.4e-27 126.3 101 69.3
CARHR160820 Cardamine hirsuta HOM05D000018 ORTHO05D003948 1.8e-27 125.9 98 70.4
TWI53G0595 Tripterygium wilfordii HOM05D000018 ORTHO05D003948 2.4e-27 125.6 98 68.4
AUR62003368 Chenopodium quinoa HOM05D000018 ORTHO05D003948 3.1e-27 125.2 100 71.0
MD02G1132200 Malus domestica HOM05D000018 ORTHO05D003948 3.1e-27 125.2 98 67.3
PSO541G2798 Papaver somniferum HOM05D000018 ORTHO05D003948 3.1e-27 125.2 91 71.4
A09p44250 Brassica napus HOM05D000018 ORTHO05D003948 4.1e-27 124.8 98 70.4
BraA09t39887Z Brassica rapa HOM05D000018 ORTHO05D003948 4.1e-27 124.8 98 70.4
C08p26510 Brassica napus HOM05D000018 ORTHO05D003948 5.4e-27 124.4 98 70.4
BolC8t50265H Brassica oleracea HOM05D000018 ORTHO05D003948 5.4e-27 124.4 98 70.4
Lalb_Chr16g0391241 Lupinus albus HOM05D000018 ORTHO05D003948 7.0e-27 124.0 98 71.4
PSO675G4501 Papaver somniferum HOM05D000018 ORTHO05D003948 7.0e-27 124.0 91 70.3
Sp5g10980 Schrenkiella parvula HOM05D000018 ORTHO05D003948 7.0e-27 124.0 98 70.4
vmacro04354 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 7.0e-27 124.0 92 76.1
vmacro22890 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 7.0e-27 124.0 92 76.1
FAN26G0281 Fragaria x ananassa HOM05D000018 ORTHO05D003948 9.1e-27 123.6 98 69.4
Psat4g097880 Pisum sativum HOM05D000018 ORTHO05D003948 9.1e-27 123.6 108 70.4
FAN19G1561 Fragaria x ananassa HOM05D000018 ORTHO05D003948 1.2e-26 123.2 98 69.4
Sabra05G0093300 Salix brachista HOM05D000018 ORTHO05D003948 1.2e-26 123.2 79 82.3
FAN23G2908 Fragaria x ananassa HOM05D000018 ORTHO05D003948 1.6e-26 122.9 98 69.4
FAN28G0388 Fragaria x ananassa HOM05D000018 ORTHO05D003948 1.6e-26 122.9 98 69.4
Glyma.01G166200 Glycine max HOM05D000018 ORTHO05D003948 1.6e-26 122.9 99 70.7
GSVIVG01009907001 Vitis vinifera HOM05D000018 ORTHO05D003948 2.0e-26 122.5 100 71.0
Actinidia28704 Actinidia chinensis HOM05D000018 ORTHO05D003948 3.5e-26 121.7 98 69.4
Aa31LG4G19270 Aethionema arabicum HOM05D000018 ORTHO05D003948 3.5e-26 121.7 98 68.4
Lj4A24T50 Lonicera japonica HOM05D000018 ORTHO05D003948 3.5e-26 121.7 90 74.4
Rhsim07G0247500 Rhododendron simsii HOM05D000018 ORTHO05D003948 3.5e-26 121.7 90 73.3
RhsimUnG0066200 Rhododendron simsii HOM05D000018 ORTHO05D003948 3.5e-26 121.7 90 73.3
AL5G31640 Arabidopsis lyrata HOM05D000018 ORTHO05D003948 4.5e-26 121.3 98 68.4
AT3G51240 Arabidopsis thaliana HOM05D000018 ORTHO05D003948 4.5e-26 121.3 98 68.4
Carub.0005s1761 Capsella rubella HOM05D000018 ORTHO05D003948 4.5e-26 121.3 100 71.0
TAR628G0707 Trochodendron aralioides HOM05D000018 ORTHO05D003948 4.5e-26 121.3 91 73.6
CDE05G3201 Ceratophyllum demersum HOM05D000018 ORTHO05D003948 5.9e-26 120.9 101 66.3
FvH4_1g11810 Fragaria vesca HOM05D000018 ORTHO05D003948 5.9e-26 120.9 98 68.4
Lj2A610G29 Lonicera japonica HOM05D000018 ORTHO05D003948 7.7e-26 120.6 78 79.5
Prupe.7G168300 Prunus persica HOM05D000018 ORTHO05D003948 7.7e-26 120.6 98 67.3
CDE05G0544 Ceratophyllum demersum HOM05D000018 ORTHO05D003948 1.0e-25 120.2 102 64.7
Thecc.01G018500 Theobroma cacao HOM05D000018 ORTHO05D003948 1.0e-25 120.2 99 71.7
Cfa006973 Carpinus fangiana HOM05D000018 ORTHO05D003948 1.3e-25 119.8 98 69.4
Medtr5g022020 Medicago truncatula HOM05D000018 ORTHO05D003948 1.3e-25 119.8 88 71.6
BcaC06g33044 Brassica carinata HOM05D000018 ORTHO05D003948 1.7e-25 119.4 90 70.0
BraA03t13929Z Brassica rapa HOM05D000018 ORTHO05D003948 5.0e-25 117.9 77 76.6
CANSAT25G2993 Cannabis sativa HOM05D000018 ORTHO05D003948 5.0e-25 117.9 109 60.6
Migut.C00836 Erythranthe guttata HOM05D000018 ORTHO05D003948 8.6e-25 117.1 104 64.4
Medtr3g058610 Medicago truncatula HOM05D000018 ORTHO05D003948 8.6e-25 117.1 86 72.1
HanXRQChr16g0531451 Helianthus annuus HOM05D000018 ORTHO05D003948 1.1e-24 116.7 88 69.3
MBI09_g26112_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D003948 1.1e-24 116.7 100 67.0
ATR0810G166 Amborella trichopoda HOM05D000018 ORTHO05D003948 1.9e-24 115.9 98 64.3
Thhalv10010399m.g Eutrema salsugineum HOM05D000018 ORTHO05D003948 7.2e-24 114.0 77 74.0
Sed0005336 Sechium edule HOM05D000018 ORTHO05D003948 7.2e-24 114.0 101 63.4
Oeu046264.1 Olea europaea HOM05D000018 ORTHO05D003948 9.5e-24 113.6 103 66.0
BolC7t45140H Brassica oleracea HOM05D000018 ORTHO05D003948 1.2e-23 113.2 77 72.7
CSS0019002 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D003948 2.1e-23 112.5 74 77.0
Lsat_1_v5_gn_3_74560 Lactuca sativa HOM05D000018 ORTHO05D003948 2.1e-23 112.5 85 70.6
ECA246G1375 Erigeron canadensis HOM05D000018 ORTHO05D003948 2.8e-23 112.1 98 63.3
SGA_v2.0_scaffold92G28229 Striga asiatica HOM05D000018 ORTHO05D003948 2.8e-23 112.1 105 61.0
Lalb_Chr09g0321711 Lupinus albus HOM05D000018 ORTHO05D003948 6.1e-23 110.9 99 62.6
Zm00001eb067380 Zea mays HOM05D000018 ORTHO05D003948 3.0e-22 108.6 98 61.2
unitig_747.g21533 Utricularia gibba HOM05D000018 ORTHO05D003948 6.8e-22 107.5 98 59.2
MSTRG.25249 Avicennia marina HOM05D000018 ORTHO05D003948 1.2e-21 106.7 106 60.4
Os04g0662600 Oryza sativa ssp. japonica HOM05D000018 ORTHO05D003948 2.0e-21 105.9 110 58.2
Migut.N03161 Erythranthe guttata HOM05D000018 ORTHO05D003948 2.6e-21 105.5 79 65.8
SalBow8G2311 Salvia bowleyana HOM05D000018 ORTHO05D003948 2.6e-21 105.5 77 68.8
CAN.G1274.5 Capsicum annuum HOM05D000018 ORTHO05D003948 3.4e-21 105.1 74 75.7
DCAR_009488 Daucus carota HOM05D000018 ORTHO05D003948 1.7e-20 102.8 91 65.9
SEGI_10109 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 1.7e-20 102.8 74 71.6
DCAR_009487 Daucus carota HOM05D000018 ORTHO05D003948 2.8e-20 102.1 91 64.8
ClCG10G000740 Citrullus lanatus HOM05D000018 ORTHO05D003948 4.9e-20 101.3 69 73.9
DCAR_009489 Daucus carota HOM05D000018 ORTHO05D003948 8.3e-20 100.5 90 64.4
SalBow7G4359 Salvia bowleyana HOM05D000018 ORTHO05D019588 8.3e-20 100.5 75 68.0
SEGI_20240 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 8.3e-20 100.5 71 70.4
Nn5g27950 Nelumbo nucifera HOM05D000018 ORTHO05D003948 2.4e-19 99.0 98 60.2
SEGI_29768 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 3.5e-18 95.1 74 66.2
HPP92_025697 Vanilla planifolia HOM05D000018 ORTHO05D003948 5.9e-18 94.4 73 64.4
Nn1g08788 Nelumbo nucifera HOM05D000018 ORTHO05D003948 2.3e-17 92.4 86 58.1
MELO3C031936.2 Cucumis melo HOM05D000018 ORTHO05D003948 6.6e-17 90.9 76 60.5
AUR62033906 Chenopodium quinoa HOM05D000018 ORTHO05D003948 8.6e-17 90.5 76 61.8
AUR62041911 Chenopodium quinoa HOM05D000018 ORTHO05D003948 8.6e-17 90.5 103 54.4
CsaV3_3G000790 Cucumis sativus L. HOM05D000018 ORTHO05D003948 1.5e-16 89.7 76 59.2
Sc15g0003530 Simmondsia chinensis HOM05D000018 ORTHO05D003948 2.5e-16 89.0 104 51.9
AUR62041908 Chenopodium quinoa HOM05D000018 ORTHO05D003948 5.6e-16 87.8 76 60.5
ATR0810G036 Amborella trichopoda HOM05D000018 ORTHO05D019588 7.3e-16 87.4 64 64.1
AUR62033907 Chenopodium quinoa HOM05D000018 ORTHO05D003948 1.6e-15 86.3 103 50.5
AUR62041909 Chenopodium quinoa HOM05D000018 ORTHO05D003948 1.6e-15 86.3 76 59.2
EL10Ac1g02209 Beta vulgaris HOM05D000018 ORTHO05D003948 3.6e-15 85.1 104 50.0
EL10Ac1g02204 Beta vulgaris HOM05D000018 ORTHO05D003948 6.1e-15 84.3 82 54.9
Hma1.2p1_0258F.1_g104120 Hydrangea macrophylla HOM05D000018 ORTHO05D019588 1.8e-14 82.8 67 70.1
Sc26g0004400 Simmondsia chinensis HOM05D000018 ORTHO05D003948 3.0e-14 82.0 68 60.3
Sed0000948 Sechium edule HOM05D000018 ORTHO05D003948 4.0e-14 81.6 68 60.3
Sc15g0003540 Simmondsia chinensis HOM05D000018 ORTHO05D003948 1.2e-13 80.1 101 51.5
MELO3C035229.2 Cucumis melo HOM05D000018 ORTHO05D003948 3.4e-13 78.6 68 55.9
EL10Ac1g02207 Beta vulgaris HOM05D000018 ORTHO05D003948 4.4e-13 78.2 96 45.8
CsaV3_6G009030 Cucumis sativus L. HOM05D000018 ORTHO05D003948 9.8e-13 77.0 67 55.2
HPP92_025705 Vanilla planifolia HOM05D000018 ORTHO05D019588 9.8e-13 77.0 63 66.7
Sed0016498 Sechium edule HOM05D000018 ORTHO05D003948 2.2e-12 75.9 67 55.2
AUR62013956 Chenopodium quinoa HOM05D000018 ORTHO05D019588 8.3e-12 73.9 68 60.3
Sp4g04240 Schrenkiella parvula HOM05D000018 ORTHO05D003948 2.4e-11 72.4 60 60.0
ClCG06G002880 Citrullus lanatus HOM05D000018 ORTHO05D003948 3.2e-11 72.0 50 68.0
CDE02G1828 Ceratophyllum demersum HOM05D000018 ORTHO05D003948 4.1e-11 71.6 76 52.6
Sp4g04220 Schrenkiella parvula HOM05D000018 ORTHO05D019588 5.4e-11 71.2 60 66.7
CDE06G1489 Ceratophyllum demersum HOM05D000018 ORTHO05D003948 3.5e-10 68.6 76 48.7
EL10Ac1g02215 Beta vulgaris HOM05D000018 ORTHO05D003948 6.0e-10 67.8 58 60.3
BcaC07g40885 Brassica carinata HOM05D000481 ORTHO05D000471 1.7e-09 66.2 60 55.0
C08p38820 Brassica napus HOM05D000481 ORTHO05D000471 1.7e-09 66.2 60 55.0
A04p05560 Brassica napus HOM05D000018 ORTHO05D003948 8.6e-09 63.9 64 54.7
Hund11781 Selenicereus undatus HOM05D000018 ORTHO05D003948 1.1e-08 63.5 91 44.0
SHI37587 Sapria himalayana HOM05D000018 ORTHO05D367541 5.6e-08 61.2 79 44.3
Ciclev10023305m.g Citrus clementina HOM05D000018 ORTHO05D003948 1.2e-07 60.1 38 78.9
A09p55820 Brassica napus HOM05D000481 ORTHO05D003948 8.0e-07 57.4 48 60.4
BraA09t40985Z Brassica rapa HOM05D000481 ORTHO05D003948 8.0e-07 57.4 48 60.4


User provided reference genes

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