Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 1.4e-62 243.0 143 100.0
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 3.2e-48 195.3 145 77.2
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 3.4e-45 185.3 146 74.7
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 3.1e-43 178.7 143 72.7
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 1.7e-41 172.9 147 76.9
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 5.4e-35 151.4 150 67.3
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 4.1e-27 125.2 165 53.9
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 2.7e-26 122.5 166 53.6
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.3e-25 120.2 160 54.4
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 8.0e-23 110.9 141 60.3
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 3.1e-22 109.0 149 58.4
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 1.7e-20 103.2 147 55.1
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 1.4e-19 100.1 153 55.6
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 2.1e-18 96.3 115 57.4
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 4.6e-18 95.1 168 47.6
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 1.3e-17 93.6 147 53.1
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 1.9e-16 89.7 147 49.7
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 1.9e-16 89.7 150 46.0
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 2.5e-16 89.4 145 49.0
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 3.3e-16 89.0 155 43.2
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 7.3e-16 87.8 143 44.8
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 1.6e-15 86.7 150 48.0
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.6e-15 85.5 149 47.7
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 3.6e-15 85.5 149 47.7
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 3.6e-15 85.5 155 46.5
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 4.7e-15 85.1 149 47.7
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 1.1e-14 84.0 150 45.3
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.4e-14 83.6 150 44.7
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 2.3e-14 82.8 143 46.9
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 4.0e-14 82.0 109 54.1
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 4.0e-14 82.0 111 55.0
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 5.2e-14 81.6 142 47.9
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 5.2e-14 81.6 142 47.9
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 2.6e-13 79.3 102 55.9
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 3.4e-13 79.0 147 44.2
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 3.4e-13 79.0 154 44.8
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 5.8e-13 78.2 123 52.8
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 5.8e-13 78.2 144 50.0
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 7.5e-13 77.8 149 47.0
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 9.9e-13 77.4 142 45.1
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 2.9e-12 75.9 146 47.3
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 4.9e-12 75.1 135 40.0
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 4.9e-12 75.1 151 47.0
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 8.3e-12 74.3 148 48.6
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.1e-11 73.9 146 41.1
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 3.2e-11 72.4 153 45.8
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 5.4e-11 71.6 153 48.4
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 5.4e-11 71.6 158 39.2
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 7.1e-11 71.2 120 45.8
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 7.1e-11 71.2 101 45.5
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 7.1e-11 71.2 116 47.4
VMungo0331G0467 Vigna mungo HOM05D005060 ORTHO05D005975 7.1e-11 71.2 136 43.4
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 9.2e-11 70.9 149 40.3
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 2.1e-10 69.7 150 40.0
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 2.7e-10 69.3 149 40.9
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 3.5e-10 68.9 149 47.7
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 7.8e-10 67.8 157 43.3
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 1.0e-09 67.4 150 44.7
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 1.3e-09 67.0 140 36.4
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 1.7e-09 66.6 134 38.8
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 2.3e-09 66.2 150 46.0
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 2.3e-09 66.2 150 46.0
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 2.3e-09 66.2 150 46.0
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 2.3e-09 66.2 151 38.4
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 3.9e-09 65.5 151 38.4
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 5.1e-09 65.1 144 42.4
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 5.1e-09 65.1 116 38.8
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 6.6e-09 64.7 153 37.3
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 6.6e-09 64.7 151 38.4
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 8.6e-09 64.3 146 40.4
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 1.1e-08 63.9 145 44.1
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.5e-08 63.5 141 44.0
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 1.5e-08 63.5 150 45.3
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 1.5e-08 63.5 150 45.3
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 2.5e-08 62.8 157 44.6
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 2.5e-08 62.8 90 52.2
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 2.5e-08 62.8 157 44.6
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 2.5e-08 62.8 157 44.6
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 4.3e-08 62.0 150 47.3
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 7.3e-08 61.2 149 43.6
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 1.2e-07 60.5 151 39.7
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 1.6e-07 60.1 154 47.4
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 2.8e-07 59.3 152 42.8
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 2.8e-07 59.3 120 44.2
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 3.6e-07 58.9 153 42.5
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 4.7e-07 58.5 153 45.8
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 4.7e-07 58.5 141 38.3
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 4.7e-07 58.5 150 40.0
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 6.2e-07 58.2 153 45.8
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 8.1e-07 57.8 112 44.6
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 8.1e-07 57.8 147 38.1
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.1e-06 57.4 135 34.8
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 1.8e-06 56.6 146 40.4
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 4.0e-06 55.5 146 38.4
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 4.0e-06 55.5 149 34.9
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 4.0e-06 55.5 147 32.7
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 6.8e-06 54.7 116 41.4
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 6.8e-06 54.7 102 42.2


User provided reference genes

Program Settings