Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.9e-173 612.5 315 100.0
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.9e-133 479.6 315 81.9
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 5.7e-130 468.0 319 78.4
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 6.5e-118 427.9 312 75.3
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 9.8e-106 387.5 313 67.7
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.2e-103 380.6 317 67.2
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.7e-103 379.4 313 68.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 9.5e-93 344.4 310 63.5
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 3.1e-91 339.3 324 61.1
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.0e-78 297.7 304 59.2
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 5.8e-74 282.0 322 55.0
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 7.4e-53 211.8 331 43.2
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 9.6e-53 211.5 331 44.1
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.3e-52 211.1 324 43.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.0e-51 206.1 330 42.7
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.0e-51 206.1 330 42.7
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 9.0e-51 204.9 329 43.8
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 9.0e-51 204.9 333 40.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 1.5e-50 204.1 324 41.0
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.7e-49 200.7 334 42.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 6.5e-49 198.7 337 41.5
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.4e-48 197.6 307 43.0
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.2e-48 196.4 313 44.1
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.8e-46 190.7 346 37.6
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.3e-46 190.3 330 41.8
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.1e-45 188.0 330 40.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.6e-44 184.1 318 41.8
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 2.2e-44 183.7 331 40.2
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-43 180.6 333 37.2
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.6e-42 176.8 296 42.9
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.0e-41 174.9 318 37.4
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.0e-41 174.9 324 36.7
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.0e-41 172.6 329 38.3
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.0e-41 172.6 323 37.5
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.5e-41 171.8 321 38.3
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.9e-40 170.6 335 36.4
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.2e-40 169.9 330 38.2
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 7.2e-40 168.7 335 36.1
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.2e-40 168.7 327 35.2
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.2e-39 167.9 316 39.9
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.2e-39 167.9 325 35.7
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.6e-39 167.5 273 40.7
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.7e-39 166.8 327 36.4
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.6e-39 166.4 282 42.9
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.6e-39 166.0 333 35.7
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.1e-39 165.6 335 35.8
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.0e-38 164.9 342 35.7
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.0e-38 164.9 327 38.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 1.0e-38 164.9 324 34.6
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.8e-38 164.1 323 35.9
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.3e-38 163.7 325 36.9
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 3.9e-38 162.9 271 41.7
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.1e-37 161.4 334 36.2
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.5e-37 161.0 325 35.7
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.5e-37 161.0 333 33.6
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.3e-37 159.5 324 36.4
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 4.3e-37 159.5 282 43.6
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.7e-37 159.1 324 38.0
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.7e-37 158.3 309 38.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.3e-36 157.9 324 34.0
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.7e-36 157.5 327 34.3
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.2e-36 157.1 324 34.0
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.8e-36 156.8 265 40.0
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 6.3e-36 155.6 321 38.0
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.8e-35 154.1 309 37.5
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.1e-35 152.9 310 38.4
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.1e-35 152.9 310 38.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 4.1e-35 152.9 320 37.8
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 5.3e-35 152.5 317 35.6
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 9.1e-35 151.8 329 34.3
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.2e-34 151.4 340 38.2
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.0e-34 150.6 328 32.9
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.6e-34 150.2 319 34.5
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 2.6e-34 150.2 331 38.1
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.4e-34 149.8 324 36.7
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 4.5e-34 149.4 256 40.6
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 5.9e-34 149.1 331 34.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 7.7e-34 148.7 278 41.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.0e-33 148.3 324 36.4
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.1e-32 144.8 315 39.4
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.2e-32 142.9 326 35.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.2e-32 142.9 284 35.9
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.2e-32 142.9 252 39.3
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 4.2e-32 142.9 307 36.5
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 9.4e-32 141.7 321 34.6
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-31 141.4 315 34.6
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-31 141.4 315 34.6
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.6e-31 141.0 297 32.0
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.6e-31 139.8 324 35.5
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 4.7e-31 139.4 185 45.9
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 7.9e-31 138.7 326 34.7
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.4e-30 137.9 258 41.9
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-30 137.5 315 34.0
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-30 137.5 315 34.0
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.0e-30 136.7 323 33.4
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 5.1e-30 136.0 322 34.2
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 6.7e-30 135.6 312 36.2
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 8.8e-30 135.2 312 33.3
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.0e-29 134.0 314 35.4
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.6e-29 133.7 321 33.3
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.3e-29 133.3 319 34.2
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.4e-29 132.9 311 33.8
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-28 131.3 319 34.8
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.7e-28 131.0 329 34.3
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 3.7e-28 129.8 318 33.6
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.7e-28 129.8 284 34.2
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 4.8e-28 129.4 315 33.3
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 6.3e-28 129.0 234 39.3
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 8.2e-28 128.6 321 33.6
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 2.4e-27 127.1 319 33.5
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 4.1e-27 126.3 323 33.7
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 5.3e-27 125.9 319 32.6
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.5e-26 124.4 319 32.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 5.9e-26 122.5 327 32.4
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.0e-25 121.7 311 31.8
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.9e-25 120.2 326 32.8
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.8e-25 119.8 318 32.7
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.0e-25 119.4 318 31.1
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 7.2e-24 115.5 303 34.0
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 1.8e-22 110.9 306 35.9
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 2.3e-22 110.5 303 32.0
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.0e-22 110.2 323 31.0
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.2e-22 109.4 324 30.2
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.0e-21 107.5 303 30.7
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.0e-21 107.5 301 31.6
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.3e-20 104.8 305 32.5
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.3e-20 104.8 310 32.9
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.3e-20 104.8 154 47.4
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.8e-20 103.6 302 31.1
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 4.8e-20 102.8 307 31.3
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 4.8e-20 102.8 307 31.3
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 8.2e-20 102.1 307 31.3
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-19 101.7 302 33.4
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.1e-19 100.1 305 32.8
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.1e-19 100.1 302 30.8
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 9.1e-19 98.6 196 35.7
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.6e-18 97.1 299 31.8
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.3e-17 94.7 265 30.6
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 6.5e-17 92.4 333 28.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 8.5e-17 92.0 304 29.9
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 8.5e-17 92.0 305 30.2
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-16 91.7 303 31.0
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.1e-16 91.7 299 29.8
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 3.2e-16 90.1 295 31.2
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.1e-15 87.4 269 32.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 8.0e-15 85.5 296 27.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.4e-14 84.7 262 30.9
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 5.3e-11 72.8 303 26.1
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.6e-10 71.2 264 29.2
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 5.9e-10 69.3 270 29.6
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.0e-09 68.6 249 32.5
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 8.5e-09 65.5 310 25.5
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.3e-06 57.4 191 29.8


User provided reference genes

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