Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.2e-84 315.5 148 100.0
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.1e-80 303.1 148 98.0
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.1e-80 303.1 148 98.0
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 6.3e-79 297.4 148 95.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.0e-73 280.0 148 92.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.4e-70 269.6 148 87.8
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 6.5e-68 260.8 148 85.8
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 3.2e-67 258.5 148 83.1
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 4.2e-67 258.1 148 83.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 9.4e-67 256.9 145 84.8
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.2e-66 256.5 148 82.4
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 2.7e-66 255.4 145 85.5
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.7e-66 255.4 145 84.8
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.7e-66 255.4 148 81.1
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 3.6e-66 255.0 148 81.1
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 4.7e-66 254.6 150 79.3
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 4.7e-66 254.6 148 81.8
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.3e-65 252.3 148 81.1
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.3e-65 252.3 148 77.0
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 3.0e-65 251.9 149 81.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 83.1
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 8.8e-65 250.4 149 83.2
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 80.4
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.1e-64 250.0 146 82.2
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 2.6e-64 248.8 149 82.6
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 3.3e-64 248.4 148 79.7
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 9.7e-64 246.9 148 79.7
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 9.7e-64 246.9 148 79.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.3e-63 246.5 149 81.2
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.7e-63 246.1 141 81.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.2e-63 245.7 148 78.4
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.2e-63 245.7 148 77.7
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.2e-63 245.7 148 77.7
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 2.2e-63 245.7 148 79.1
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 2.8e-63 245.4 148 79.1
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.7e-63 245.0 148 77.0
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 8.2e-63 243.8 148 79.7
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.1e-62 243.4 148 78.4
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.4e-62 243.0 148 79.7
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.4e-62 243.0 148 78.4
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 77.7
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 2.4e-62 242.3 148 81.8
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 2.4e-62 242.3 148 81.8
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 4.1e-62 241.5 148 76.4
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 4.1e-62 241.5 148 79.7
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 78.4
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 7.0e-62 240.7 148 76.4
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 7.0e-62 240.7 147 75.5
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 78.4
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 75.0
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 77.7
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 79.1
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 75.7
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 75.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.0e-61 239.2 149 76.5
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.6e-61 238.8 145 79.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 3.5e-61 238.4 148 77.0
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 76.4
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 76.4
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 75.0
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.7e-60 236.1 153 75.2
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 75.7
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.2e-60 235.7 148 74.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.2e-60 235.7 148 73.6
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 2.2e-60 235.7 148 75.0
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.2e-60 235.7 148 74.3
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.9e-60 235.3 132 84.8
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.9e-60 235.3 139 82.0
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 6.5e-60 234.2 150 76.0
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 6.5e-60 234.2 148 74.3
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 8.5e-60 233.8 148 75.0
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.1e-59 233.4 148 75.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.1e-59 233.4 148 75.7
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 75.0
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.5e-59 232.3 148 73.6
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 3.2e-59 231.9 148 74.3
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 4.2e-59 231.5 148 74.3
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 73.0
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 72.3
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 74.3
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 75.7
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 9.4e-59 230.3 147 73.5
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 9.4e-59 230.3 148 72.3
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 71.6
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.2e-58 229.9 149 73.8
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.2e-58 229.9 133 80.5
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.2e-58 229.9 133 80.5
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.6e-58 229.6 142 75.4
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.1e-58 229.2 149 74.5
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.6e-58 228.4 133 81.2
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 6.1e-58 227.6 150 74.7
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 6.1e-58 227.6 148 73.0
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 8.0e-58 227.3 148 73.6
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 8.0e-58 227.3 148 75.0
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.0e-57 226.9 150 72.0
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.0e-57 226.9 148 73.6
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.3e-57 225.7 148 72.3
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 4.0e-57 224.9 150 72.7
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 4.0e-57 224.9 145 72.4
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 6.7e-57 224.2 146 74.0
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 8.8e-57 223.8 148 70.9
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.6e-56 222.2 148 69.6
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.3e-56 221.9 148 69.6
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.3e-56 221.9 150 70.7
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.3e-55 219.9 145 72.4
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.3e-55 219.9 148 70.9
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.8e-55 218.8 148 69.6
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.8e-55 218.0 150 70.0
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 4.1e-54 214.9 150 68.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 9.1e-54 213.8 151 66.9
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 2.7e-53 212.2 151 70.2
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 3.5e-53 211.8 149 70.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 3.5e-53 211.8 149 70.5
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.5e-53 211.8 152 70.4
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 4.5e-53 211.5 149 71.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 4.5e-53 211.5 149 71.1
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 5.9e-53 211.1 151 66.9
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 5.9e-53 211.1 151 66.9
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-52 210.3 150 68.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.0e-52 210.3 150 68.0
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.0e-52 210.3 133 72.2
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.0e-52 210.3 150 68.0
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.0e-52 210.3 134 72.4
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.7e-52 209.5 148 66.2
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 3.8e-52 208.4 150 68.0
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 8.5e-52 207.2 150 67.3
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.1e-51 206.8 148 63.5
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.5e-51 206.5 145 66.9
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.5e-51 206.5 150 66.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 3.2e-51 205.3 127 76.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 4.2e-51 204.9 134 76.1
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-50 203.4 148 66.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-50 203.4 148 66.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.2e-50 203.4 148 66.2
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 2.1e-50 202.6 155 69.7
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.7e-50 202.2 120 76.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 6.1e-50 201.1 150 66.7
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.0e-49 200.3 148 62.8
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 2.6e-48 195.7 124 74.2
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 7.5e-48 194.1 150 66.0
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 3.7e-47 191.8 150 64.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 3.1e-46 188.7 134 70.1
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.1e-42 176.0 151 64.2
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.5e-40 169.9 148 59.5
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.9e-39 164.9 148 59.5
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 7.8e-37 157.5 103 73.8
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 2.5e-35 152.5 103 72.8
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.2e-34 150.2 114 68.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 7.5e-32 141.0 149 50.3
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 7.0e-30 134.4 142 51.4
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.9e-22 109.8 145 42.8
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 3.0e-20 102.4 68 77.9
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 7.3e-19 97.8 77 70.1
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.2e-18 97.1 128 46.9
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.0e-16 89.7 87 49.4
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.5e-11 73.6 37 83.8
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 6.8e-09 64.7 92 34.8
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 8.4e-07 57.8 78 35.9


User provided reference genes

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