Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.2e-265 918.3 441 100.0
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 5.4e-219 764.2 444 83.8
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.1e-216 756.5 442 83.0
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.1e-214 750.0 439 82.2
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 5.3e-190 667.9 445 72.8
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.3e-185 652.5 440 72.5
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.9e-176 622.9 461 67.5
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 4.3e-168 595.1 455 64.8
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 8.2e-167 590.9 455 64.4
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 4.5e-157 558.5 423 66.7
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.3e-143 513.8 449 59.0
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.0e-141 506.5 385 67.5
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.5e-141 505.8 450 58.2
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.1e-138 496.5 453 57.2
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 4.7e-138 495.4 449 56.3
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 8.0e-138 494.6 460 56.7
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.4e-137 493.8 460 56.5
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.8e-137 493.4 446 57.0
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.3e-137 493.0 451 57.0
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 3.0e-137 492.7 441 56.9
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.8e-137 491.5 450 56.4
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 8.8e-137 491.1 452 54.9
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 9.7e-136 487.6 448 56.0
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.2e-135 486.5 445 56.6
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.2e-133 480.7 462 55.2
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.8e-132 475.7 458 55.2
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.5e-131 473.8 461 53.6
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.2e-131 472.6 458 53.7
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.2e-131 472.6 458 53.7
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 3.2e-131 472.6 470 54.5
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 4.2e-131 472.2 466 55.6
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 7.2e-131 471.5 464 53.7
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 2.1e-130 469.9 439 56.0
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 6.8e-129 464.9 453 53.0
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 8.8e-129 464.5 463 52.9
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.5e-128 463.8 448 56.2
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.7e-127 460.3 462 52.2
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.2e-127 459.9 454 53.7
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 4.8e-127 458.8 452 52.4
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 4.8e-127 458.8 452 52.4
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 4.8e-127 458.8 483 50.7
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 6.3e-127 458.4 444 53.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.5e-125 452.6 367 61.3
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 3.5e-125 452.6 371 60.4
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 2.3e-124 449.9 463 52.3
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.1e-123 447.6 452 52.9
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 4.7e-122 442.2 367 59.1
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.4e-121 440.7 368 59.5
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 7.5e-120 434.9 459 51.0
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 7.5e-120 434.9 372 58.1
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 6.3e-119 431.8 444 51.4
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.4e-118 430.6 439 51.5
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.1e-118 429.1 468 48.1
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.0e-116 424.5 453 51.0
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 8.6e-116 421.4 465 49.0
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 3.3e-115 419.5 453 47.7
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 4.3e-115 419.1 468 47.6
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 7.3e-115 418.3 387 57.4
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.6e-114 417.2 452 47.8
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.3e-113 413.3 453 48.1
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 3.1e-113 412.9 451 48.3
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.2e-112 411.0 454 49.6
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 2.6e-112 409.8 459 47.7
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 7.0e-110 401.7 381 54.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.0e-108 397.9 445 49.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.3e-108 397.5 458 48.3
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 3.0e-108 396.4 447 49.7
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 6.6e-108 395.2 455 48.1
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.2e-106 391.0 451 47.5
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.8e-106 389.8 433 49.9
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 2.8e-106 389.8 430 49.3
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 6.2e-106 388.7 451 46.3
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 4.0e-105 386.0 455 45.7
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 8.9e-105 384.8 442 46.6
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.2e-104 384.4 455 45.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 2.0e-104 383.6 431 47.3
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.0e-104 383.6 455 45.7
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.0e-104 383.6 455 45.7
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 9.8e-104 381.3 305 62.0
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 2.2e-103 380.2 364 53.6
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.1e-102 377.9 406 52.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 3.2e-102 376.3 388 51.3
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.1e-101 373.6 454 47.6
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.3e-100 370.9 492 42.7
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 4.3e-99 365.9 446 47.1
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 5.6e-99 365.5 446 47.3
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.2e-98 364.4 441 46.9
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.6e-98 364.0 439 46.2
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 3.6e-98 362.8 446 47.3
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.8e-97 360.5 441 44.4
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.3e-97 360.1 371 50.4
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.5e-96 357.5 475 44.2
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 6.4e-95 352.1 446 46.0
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 8.3e-95 351.7 362 49.7
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.4e-94 350.1 446 46.4
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 9.2e-94 348.2 448 45.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.7e-93 346.7 444 44.6
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.1e-91 341.3 450 46.9
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 3.6e-90 336.3 447 46.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.4e-86 322.4 440 43.4
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.5e-83 313.5 535 38.7
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.8e-81 307.4 340 48.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.9e-79 300.1 350 49.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 3.0e-76 290.0 287 53.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.0e-76 290.0 425 41.2
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 3.9e-76 289.7 462 42.0
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.1e-74 282.0 439 39.6
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.3e-71 274.6 402 40.3
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.2e-69 268.1 333 45.0
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 6.0e-69 265.8 420 40.0
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.5e-67 260.4 361 42.7
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 3.3e-67 260.0 269 51.7
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.8e-66 256.1 426 37.1
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.4e-62 244.6 497 34.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.3e-59 233.4 548 31.2
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 5.7e-59 232.6 205 60.0
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.3e-58 231.5 241 50.2
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 7.9e-53 212.2 144 66.7
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 9.0e-49 198.7 400 33.8
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.6e-45 188.0 489 30.3
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-42 176.8 220 44.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.1e-41 175.3 272 40.1
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 6.9e-41 172.6 186 48.4
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.2e-38 163.3 161 50.3
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.4e-38 162.2 153 52.3
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.4e-28 131.7 84 69.0
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.3e-26 125.2 98 60.2
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 4.8e-26 123.2 216 35.6
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.7e-24 117.5 153 39.9
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.2e-15 87.8 150 37.3
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 4.7e-13 80.1 58 60.3
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 2.3e-12 77.8 101 39.6
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.7e-10 71.6 83 44.6
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 3.7e-10 70.5 44 70.5
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.4e-09 68.6 52 57.7
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.5e-06 58.5 156 31.4


User provided reference genes

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