Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 2.2e-191 672.2 350 100.0
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 2.7e-96 356.3 351 60.4
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 1.1e-94 350.9 355 59.4
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 3.3e-94 349.4 361 58.7
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 7.3e-86 321.6 358 56.1
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 4.8e-85 318.9 367 53.1
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 4.5e-83 312.4 366 50.8
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 2.7e-80 303.1 362 53.0
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 6.7e-79 298.5 359 53.5
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 3.3e-78 296.2 359 53.2
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.0e-75 287.0 362 50.0
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 5.5e-73 278.9 155 88.4
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 1.6e-72 277.3 370 47.3
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 2.7e-72 276.6 346 48.3
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 6.0e-72 275.4 351 48.1
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 8.7e-71 271.6 361 47.1
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 1.9e-70 270.4 360 47.8
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 5.6e-70 268.9 359 47.9
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 6.2e-69 265.4 351 48.1
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.8e-68 263.8 357 47.9
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 2.4e-68 263.5 357 48.2
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 3.1e-68 263.1 365 48.8
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 6.9e-68 261.9 353 47.6
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 9.0e-68 261.5 351 47.0
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 1.2e-67 261.2 352 47.2
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 2.0e-67 260.4 362 45.6
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 2.0e-67 260.4 352 47.2
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 4.5e-67 259.2 362 47.0
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 4.5e-67 259.2 361 44.9
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 5.8e-67 258.8 355 46.5
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 7.6e-67 258.5 353 45.6
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 7.6e-67 258.5 361 43.8
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 1.3e-66 257.7 363 46.8
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 4.9e-66 255.8 367 46.3
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 6.5e-66 255.4 353 45.9
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 2.5e-65 253.4 357 48.2
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 4.2e-65 252.7 357 47.9
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 2.1e-64 250.4 355 45.1
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 6.0e-64 248.8 355 45.1
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 7.9e-64 248.4 364 43.7
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 7.9e-64 248.4 354 47.7
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.0e-63 248.1 358 45.3
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 1.8e-63 247.3 354 45.2
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 2.3e-63 246.9 361 44.9
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.1e-62 244.6 355 42.0
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.1e-62 244.6 346 44.5
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 2.5e-62 243.4 363 46.8
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 3.3e-62 243.0 354 45.2
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 7.4e-62 241.9 353 44.5
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 2.2e-61 240.4 358 45.0
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 2.2e-61 240.4 351 45.0
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 4.8e-61 239.2 356 46.9
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 4.8e-61 239.2 353 44.5
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 4.8e-61 239.2 353 42.2
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 1.1e-60 238.0 353 44.5
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.8e-60 237.3 357 43.7
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 4.1e-60 236.1 355 46.8
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 5.3e-60 235.7 368 44.3
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 6.9e-60 235.3 361 43.5
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 9.0e-60 235.0 354 43.8
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 3.4e-59 233.0 370 43.8
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 1.2e-56 224.6 355 45.1
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 3.6e-56 223.0 335 43.3
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 6.1e-56 222.2 331 40.2
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.0e-55 221.5 345 42.6
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 5.1e-55 219.2 339 40.7
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 6.7e-55 218.8 353 41.6
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 6.7e-55 218.8 355 45.4
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 2.0e-54 217.2 201 56.7
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 3.3e-54 216.5 332 42.5
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.3e-53 214.5 357 42.6
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 6.3e-53 212.2 359 43.7
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 2.4e-52 210.3 354 42.7
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 6.9e-52 208.8 363 39.9
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 3.4e-51 206.5 367 40.9
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 7.7e-51 205.3 152 63.2
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 7.7e-51 205.3 374 37.4
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 1.7e-50 204.1 354 44.4
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.7e-50 204.1 156 62.2
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 4.7e-48 196.1 353 43.3
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 1.4e-47 194.5 356 35.7
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 3.9e-47 193.0 148 64.2
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.4e-44 184.5 328 43.9
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 1.5e-43 181.0 364 36.3
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 5.9e-43 179.1 166 56.6
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 1.0e-42 178.3 145 62.8
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 5.0e-42 176.0 357 39.2
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 1.6e-40 171.0 368 39.1
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 2.1e-40 170.6 359 35.7
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 2.1e-40 170.6 371 36.4
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 2.7e-40 170.2 356 36.5
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 1.4e-39 167.9 199 47.7
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 5.2e-39 166.0 369 38.5
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 2.0e-38 164.1 151 55.6
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 2.6e-38 163.7 364 38.7
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 3.3e-38 163.3 156 53.2
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 4.4e-38 162.9 201 46.8
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 7.4e-38 162.2 211 46.0
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 9.7e-38 161.8 211 46.0
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 9.7e-38 161.8 125 63.2
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 1.3e-37 161.4 156 52.6
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 2.8e-37 160.2 353 33.4
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 2.8e-37 160.2 153 52.9
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 4.8e-37 159.5 349 40.7
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 9.1e-36 155.2 160 53.8
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 9.1e-36 155.2 160 53.8
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 4.5e-35 152.9 206 45.6
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 5.9e-35 152.5 160 53.1
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 1.0e-34 151.8 206 45.1
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 1.3e-34 151.4 355 33.2
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.1e-32 144.1 122 59.8
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 8.3e-29 132.1 192 39.6
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 4.5e-27 126.3 179 42.5
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 4.5e-27 126.3 179 42.5
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 5.9e-27 125.9 155 43.9
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 1.1e-25 121.7 137 46.7
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 9.4e-25 118.6 159 45.3
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 5.2e-23 112.8 286 38.5
Medtr5g068540 Medicago truncatula HOM05D000512 ORTHO05D000861 1.7e-21 107.8 85 71.8
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 3.8e-18 96.7 85 60.0
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 1.3e-13 81.6 63 73.0
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 1.7e-13 81.3 86 57.0
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 1.7e-10 71.2 85 50.6
Cfa006376 Carpinus fangiana HOM05D001109 ORTHO05D001051 2.3e-10 70.9 131 30.5
Haze_04403 Corylus avellana HOM05D001109 ORTHO05D001051 2.3e-10 70.9 131 30.5
CDE05G0127 Ceratophyllum demersum HOM05D001109 ORTHO05D001051 2.8e-08 63.9 134 28.4
SalBow3G0670 Salvia bowleyana HOM05D001109 ORTHO05D001051 2.8e-08 63.9 138 31.9
SalBow3G1864 Salvia bowleyana HOM05D001109 ORTHO05D001051 2.8e-08 63.9 138 31.9
QL03p029650 Quercus lobata HOM05D001109 ORTHO05D001051 3.6e-08 63.5 131 29.0
Hma1.2p1_0384F.1_g140860 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 4.7e-08 63.2 139 30.2
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 1.0e-07 62.0 141 31.2
HPP92_005509 Vanilla planifolia HOM05D001109 ORTHO05D001051 1.0e-07 62.0 93 36.6
arahy.Tifrunner.gnm1.ann1.07VZ9L Arachis hypogaea HOM05D001382 ORTHO05D001266 1.8e-07 61.2 143 30.8
arahy.Tifrunner.gnm1.ann1.MLQ69B Arachis hypogaea HOM05D001382 ORTHO05D001266 1.8e-07 61.2 143 30.8
MSTRG.9214 Avicennia marina HOM05D001109 ORTHO05D001051 1.8e-07 61.2 155 29.0
RcHm_v2.0_Chr2g0138051 Rosa chinensis HOM05D002301 ORTHO05D002316 1.8e-07 61.2 140 31.4
SEGI_08323 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 1.8e-07 61.2 143 30.8
THA.LOC104798699 Tarenaya hassleriana HOM05D002301 ORTHO05D002316 3.1e-07 60.5 139 29.5
Sc19g0005570 Simmondsia chinensis HOM05D001109 ORTHO05D001051 4.0e-07 60.1 141 29.8
Aa31LG5G800 Aethionema arabicum HOM05D001977 ORTHO05D002246 6.8e-07 59.3 103 32.0
COL.COLO4_15517 Corchorus olitorius HOM05D001109 ORTHO05D001051 8.9e-07 58.9 146 29.5
Oeu055046.1 Olea europaea HOM05D001109 ORTHO05D001051 8.9e-07 58.9 133 28.6
EL10Ac4g09751 Beta vulgaris HOM05D001109 ORTHO05D001051 1.2e-06 58.5 116 29.3
BcaC04g23510 Brassica carinata HOM05D002301 ORTHO05D002316 1.5e-06 58.2 142 28.2
VMungo0464G1303 Vigna mungo HOM05D002301 ORTHO05D002316 2.0e-06 57.8 142 32.4
BolC9t53010H Brassica oleracea HOM05D001977 ORTHO05D002246 2.6e-06 57.4 155 27.7
BraA09t35742Z Brassica rapa HOM05D001977 ORTHO05D002246 2.6e-06 57.4 155 27.7
Dinv43883 Davidia involucrata HOM05D003005 ORTHO05D004170 2.6e-06 57.4 130 29.2
Gohir.A12G110100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 2.6e-06 57.4 89 38.2
Gorai.008G122700 Gossypium raimondii HOM05D001109 ORTHO05D001051 2.6e-06 57.4 89 38.2
SEGI_27303 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 2.6e-06 57.4 143 28.0
Glyma.03G249700 Glycine max HOM05D001109 ORTHO05D001051 3.4e-06 57.0 133 29.3
Lj8P197T23 Lonicera japonica HOM05D001109 ORTHO05D001051 3.4e-06 57.0 139 25.9
CSS0010196 Camellia sinensis var. sinensis HOM05D002301 ORTHO05D002316 4.4e-06 56.6 137 27.7
Prupe.2G298800 Prunus persica HOM05D002301 ORTHO05D002316 4.4e-06 56.6 140 30.7
vmacro20871 Vaccinium macrocarpon HOM05D001109 ORTHO05D001051 4.4e-06 56.6 158 28.5
A09p06710 Brassica napus HOM05D002301 ORTHO05D002316 5.8e-06 56.2 142 28.2
BraA09t36317Z Brassica rapa HOM05D002301 ORTHO05D002316 5.8e-06 56.2 142 28.2
Eucgr.A02890 Eucalyptus grandis HOM05D002301 ORTHO05D002316 5.8e-06 56.2 150 30.7
Lj2g0012008 Lotus japonicus HOM05D002301 ORTHO05D002316 5.8e-06 56.2 137 32.1
Potri.013G048400 Populus trichocarpa HOM05D001109 ORTHO05D001051 5.8e-06 56.2 110 29.1
TAR633G2301 Trochodendron aralioides HOM05D002301 ORTHO05D002316 5.8e-06 56.2 142 25.4
C09p00760 Brassica napus HOM05D001977 ORTHO05D002246 7.5e-06 55.8 155 27.7
CDE06G0347 Ceratophyllum demersum HOM05D002301 ORTHO05D002316 7.5e-06 55.8 110 32.7
FAN05G5095 Fragaria x ananassa HOM05D002301 ORTHO05D002316 7.5e-06 55.8 140 30.0
Solyc03g005720.3 Solanum lycopersicum HOM05D001109 ORTHO05D001051 7.5e-06 55.8 133 27.1
THA.LOC104817045 Tarenaya hassleriana HOM05D001109 ORTHO05D001051 7.5e-06 55.8 155 26.5
Cpa.g.sc107.88 Carica papaya HOM05D002301 ORTHO05D002316 9.8e-06 55.5 137 29.9
AUR62012209 Chenopodium quinoa HOM05D002301 ORTHO05D002316 9.8e-06 55.5 154 26.6
Eucgr.H00125 Eucalyptus grandis HOM05D001109 ORTHO05D001051 9.8e-06 55.5 133 29.3
Eucgr.K00286 Eucalyptus grandis HOM05D002301 ORTHO05D002316 9.8e-06 55.5 139 30.9
Medtr1g045780 Medicago truncatula HOM05D001109 ORTHO05D001051 9.8e-06 55.5 114 26.3
Sopen03g001730 Solanum pennellii HOM05D001109 ORTHO05D001051 9.8e-06 55.5 133 27.1


User provided reference genes

Program Settings