Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 3.3e-114 415.2 214 100.0
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 2.2e-94 349.4 184 95.1
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 3.7e-89 332.0 184 90.2
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 6.9e-88 327.8 184 88.0
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 2.2e-81 306.2 185 82.7
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 7.7e-79 297.7 184 82.6
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 1.7e-78 296.6 177 84.7
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 5.5e-77 291.6 184 81.0
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 1.2e-76 290.4 178 79.2
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 1.2e-76 290.4 178 79.2
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 2.3e-75 286.2 184 76.6
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 8.8e-75 284.3 185 77.8
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 3.3e-74 282.3 178 82.0
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 5.5e-69 265.0 153 89.5
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 4.0e-59 232.3 183 63.4
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 1.1e-58 230.7 182 62.1
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 1.1e-58 230.7 176 66.5
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 7.5e-58 228.0 184 62.5
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 9.7e-58 227.6 179 64.8
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 1.4e-56 223.8 180 59.4
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 6.5e-54 214.9 180 61.1
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 8.5e-54 214.5 180 61.1
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 1.1e-53 214.2 180 61.1
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 1.5e-53 213.8 178 65.7
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 7.2e-53 211.5 180 56.7
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 1.6e-52 210.3 183 59.0
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 2.3e-51 206.5 125 82.4
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 1.2e-50 204.1 177 56.5
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.5e-50 203.8 173 58.4
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 3.4e-50 202.6 183 55.2
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 1.3e-49 200.7 184 58.2
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.7e-49 200.3 173 58.4
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.2e-49 199.9 175 58.9
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 2.8e-49 199.5 175 60.0
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 2.8e-49 199.5 180 55.6
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 4.8e-49 198.7 183 56.3
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 6.3e-49 198.4 174 59.2
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 1.1e-48 197.6 184 56.0
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.4e-48 197.2 172 57.6
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 1.8e-48 196.8 171 55.6
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 2.4e-48 196.4 181 57.5
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 2.4e-48 196.4 179 59.2
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 9.1e-48 194.5 182 55.5
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 1.6e-47 193.7 182 54.4
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 2.0e-47 193.4 171 56.7
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 3.5e-47 192.6 242 46.7
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 7.7e-47 191.4 181 49.7
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 6.5e-46 188.3 175 56.0
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 7.2e-45 184.9 179 55.3
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 7.2e-45 184.9 179 55.3
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.2e-44 184.1 181 49.2
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 2.7e-44 183.0 181 50.8
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 4.0e-43 179.1 184 53.8
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 6.8e-43 178.3 177 54.2
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 8.8e-43 177.9 173 53.8
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 1.2e-42 177.6 166 53.0
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 2.0e-42 176.8 173 52.6
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 3.4e-42 176.0 185 50.8
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 4.4e-42 175.6 168 53.0
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 3.7e-41 172.6 169 55.0
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 3.7e-41 172.6 182 48.9
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 6.3e-41 171.8 185 50.3
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 8.3e-41 171.4 201 49.3
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 1.1e-40 171.0 182 51.1
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 1.4e-40 170.6 170 54.1
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 1.4e-40 170.6 170 54.7
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 5.4e-40 168.7 183 50.8
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 5.4e-40 168.7 183 50.8
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 9.1e-40 167.9 179 50.8
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 9.1e-40 167.9 181 49.2
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 1.2e-39 167.5 183 48.6
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 1.6e-39 167.2 183 50.8
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.6e-39 167.2 169 51.5
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 2.7e-39 166.4 179 49.7
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 3.5e-39 166.0 183 50.3
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.3e-38 164.1 183 48.1
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 3.8e-38 162.5 179 48.0
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 3.8e-38 162.5 183 47.5
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 8.6e-38 161.4 172 52.9
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 2.5e-37 159.8 175 49.7
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 2.5e-37 159.8 185 48.1
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 4.3e-37 159.1 201 48.8
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 7.2e-37 158.3 181 48.6
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 7.2e-37 158.3 181 48.6
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 2.8e-36 156.4 177 46.9
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 1.0e-35 154.5 191 47.6
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 1.4e-35 154.1 177 46.9
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 4.0e-35 152.5 188 48.4
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 1.7e-33 147.1 213 40.8
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 3.7e-33 146.0 172 45.3
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 4.9e-33 145.6 179 46.4
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 6.4e-33 145.2 169 49.1
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 2.4e-32 143.3 85 76.5
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 7.0e-32 141.7 168 50.0
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 2.0e-31 140.2 181 43.1
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 2.7e-31 139.8 95 67.4
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 3.9e-30 136.0 176 44.9
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 9.5e-29 131.3 162 43.8
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 3.6e-28 129.4 226 37.6
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 1.0e-27 127.9 181 43.1
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 3.1e-27 126.3 83 73.5
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 3.1e-27 126.3 177 39.0
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 1.2e-26 124.4 144 47.2
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 6.4e-25 118.6 154 43.5
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 8.3e-25 118.2 102 54.9
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 2.7e-23 113.2 200 37.5
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 2.7e-23 113.2 200 37.5
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 3.5e-23 112.8 161 41.0
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.9e-21 107.1 75 69.3
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 3.3e-21 106.3 78 71.8
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 5.6e-21 105.5 99 53.5
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 9.5e-21 104.8 173 37.6
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 9.5e-21 104.8 180 37.8
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 3.1e-19 99.8 85 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 3.4e-18 96.3 102 47.1
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.6e-15 87.4 74 52.7
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.5e-13 80.9 83 55.4
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 4.0e-11 72.8 97 38.1
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 4.4e-10 69.3 144 34.7
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 3.2e-08 63.2 102 36.3
Phvul.002G272304 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 6.6e-06 55.5 50 54.0


User provided reference genes

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