Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2781 Trifolium pratense HOM05D000332 ORTHO05D046737 1.2e-32 142.5 70 100.0
TPR.G36120 Trifolium pratense HOM05D000332 ORTHO05D000268 1.1e-28 129.4 64 96.9
Medtr4g111640 Medicago truncatula HOM05D000332 ORTHO05D000268 1.5e-22 109.0 64 81.2
Medtr4g077787 Medicago truncatula HOM05D000332 ORTHO05D000268 2.0e-22 108.6 64 76.6
Psat4g046760 Pisum sativum HOM05D000332 ORTHO05D000268 3.1e-20 101.3 59 81.4
Lj4g0013927 Lotus japonicus HOM05D000332 ORTHO05D000268 1.3e-13 79.3 63 57.1
Phvul.003G178900 Phaseolus vulgaris HOM05D000332 ORTHO05D000268 1.1e-12 76.3 64 59.4
Glyma.05G014700 Glycine max HOM05D000332 ORTHO05D000268 2.4e-12 75.1 60 58.3
Lalb_Chr13g0302461 Lupinus albus HOM05D000332 ORTHO05D000268 2.4e-12 75.1 64 60.9
Lalb_Chr07g0178521 Lupinus albus HOM05D000332 ORTHO05D000268 3.1e-12 74.7 65 55.4
MD14G1220300 Malus domestica HOM05D000332 ORTHO05D000268 3.1e-12 74.7 55 58.2
VMungo1215G1651 Vigna mungo HOM05D000332 ORTHO05D000268 3.1e-12 74.7 64 59.4
CiPaw.15G124900 Carya illinoinensis HOM05D000332 ORTHO05D000268 3.5e-11 71.2 56 60.7
arahy.Tifrunner.gnm1.ann1.QEM3US Arachis hypogaea HOM05D000332 ORTHO05D000268 4.5e-11 70.9 41 65.9
arahy.Tifrunner.gnm1.ann1.38I5LT Arachis hypogaea HOM05D000332 ORTHO05D000268 5.9e-11 70.5 56 55.4
arahy.Tifrunner.gnm1.ann1.L68Q9Q Arachis hypogaea HOM05D000332 ORTHO05D000268 5.9e-11 70.5 56 55.4
Haze_18579 Corylus avellana HOM05D000332 ORTHO05D000268 5.9e-11 70.5 60 55.0
FAN13G1013 Fragaria x ananassa HOM05D000332 ORTHO05D000268 5.9e-11 70.5 61 55.7
Dinv38600 Davidia involucrata HOM05D000332 ORTHO05D000268 1.0e-10 69.7 60 55.0
Glyma.17G123200 Glycine max HOM05D000332 ORTHO05D046737 1.0e-10 69.7 59 54.2
FvH4_5g12860 Fragaria vesca HOM05D000332 ORTHO05D000268 2.2e-10 68.6 61 54.1
FAN08G2475 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.2e-10 68.6 61 54.1
FAN18G1649 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.2e-10 68.6 61 54.1
FAN18G4576 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.2e-10 68.6 61 54.1
Prupe.5G215500 Prunus persica HOM05D000332 ORTHO05D000268 3.8e-10 67.8 54 55.6
TAR622G0309 Trochodendron aralioides HOM05D000332 ORTHO05D000268 5.0e-10 67.4 54 55.6
Carub.0003s1837 Capsella rubella HOM05D000332 ORTHO05D000268 6.5e-10 67.0 59 47.5
Nn4g23677 Nelumbo nucifera HOM05D000332 ORTHO05D000268 6.5e-10 67.0 64 50.0
PGR044G0389 Punica granatum HOM05D000332 ORTHO05D000268 6.5e-10 67.0 56 55.4
Nn3g17675 Nelumbo nucifera HOM05D000332 ORTHO05D000268 1.1e-09 66.2 60 53.3
RcHm_v2.0_Chr7g0179281 Rosa chinensis HOM05D000332 ORTHO05D000268 1.1e-09 66.2 65 47.7
Atru.chr9.721 Acer truncatum HOM05D000332 ORTHO05D000268 1.5e-09 65.9 55 56.4
Oeu059709.1 Olea europaea HOM05D000332 ORTHO05D000268 1.5e-09 65.9 63 42.9
RcHm_v2.0_Chr7g0184371 Rosa chinensis HOM05D000332 ORTHO05D000268 1.5e-09 65.9 56 57.1
Cc04_g07680 Coffea canephora HOM05D000332 ORTHO05D000268 1.9e-09 65.5 56 48.2
MD06G1209600 Malus domestica HOM05D000332 ORTHO05D000268 1.9e-09 65.5 59 52.5
PSO063G0633 Papaver somniferum HOM05D000332 ORTHO05D000268 3.2e-09 64.7 59 55.9
Haze_03094 Corylus avellana HOM05D000332 ORTHO05D000268 4.2e-09 64.3 63 54.0
QL10p022371 Quercus lobata HOM05D000332 ORTHO05D000268 4.2e-09 64.3 48 56.2
BcaB04g18993 Brassica carinata HOM05D000332 ORTHO05D000268 5.5e-09 63.9 59 45.8
A03p40730 Brassica napus HOM05D000332 ORTHO05D000268 5.5e-09 63.9 59 45.8
C03p49600 Brassica napus HOM05D000332 ORTHO05D000268 5.5e-09 63.9 59 45.8
BolC3t17258H Brassica oleracea HOM05D000332 ORTHO05D000268 5.5e-09 63.9 59 45.8
BraA03t13230Z Brassica rapa HOM05D000332 ORTHO05D000268 5.5e-09 63.9 59 45.8
PSO782G5302 Papaver somniferum HOM05D000332 ORTHO05D000268 5.5e-09 63.9 59 55.9
Sp3g16670 Schrenkiella parvula HOM05D000332 ORTHO05D000268 5.5e-09 63.9 59 45.8
Aa31LG8G5450 Aethionema arabicum HOM05D000332 ORTHO05D000268 9.4e-09 63.2 56 48.2
Cfa010857 Carpinus fangiana HOM05D000332 ORTHO05D000268 1.2e-08 62.8 56 53.6
Solyc03g119880.3 Solanum lycopersicum HOM05D000332 ORTHO05D000268 1.6e-08 62.4 59 47.5
CARHR093960 Cardamine hirsuta HOM05D000332 ORTHO05D000268 2.1e-08 62.0 59 42.4
FAN13G1915 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.1e-08 62.0 60 46.7
MD14G1231000 Malus domestica HOM05D000332 ORTHO05D000268 2.1e-08 62.0 60 51.7
PGSC0003DMG400005700 Solanum tuberosum HOM05D000332 ORTHO05D000268 2.1e-08 62.0 62 45.2
Thhalv10021576m.g Eutrema salsugineum HOM05D000332 ORTHO05D000268 3.6e-08 61.2 54 48.1
AL3G31900 Arabidopsis lyrata HOM05D000332 ORTHO05D000268 4.7e-08 60.8 59 42.4
AT3G18590 Arabidopsis thaliana HOM05D000332 ORTHO05D000268 4.7e-08 60.8 59 40.7
FvH4_5g16790 Fragaria vesca HOM05D000332 ORTHO05D000268 4.7e-08 60.8 60 45.0
FAN04G1923 Fragaria x ananassa HOM05D000332 ORTHO05D000268 4.7e-08 60.8 60 45.0
FAN18G1795 Fragaria x ananassa HOM05D000332 ORTHO05D000268 4.7e-08 60.8 60 45.0
Manes.15G154700 Manihot esculenta HOM05D000332 ORTHO05D000268 4.7e-08 60.8 56 44.6
Sp1g35850 Schrenkiella parvula HOM05D000332 ORTHO05D000268 4.7e-08 60.8 62 41.9
COL.COLO4_32201 Corchorus olitorius HOM05D000332 ORTHO05D000268 6.1e-08 60.5 61 47.5
Hma1.2p1_0340F.1_g130060 Hydrangea macrophylla HOM05D000332 ORTHO05D000268 8.0e-08 60.1 52 48.1
CARHR038940 Cardamine hirsuta HOM05D000332 ORTHO05D000268 1.0e-07 59.7 56 44.6
Lsat_1_v5_gn_4_111981 Lactuca sativa HOM05D000332 ORTHO05D000268 1.0e-07 59.7 56 44.6
Nitab4.5_0011258g0010 Nicotiana tabacum HOM05D000332 ORTHO05D000268 1.0e-07 59.7 59 45.8
Actinidia35071 Actinidia chinensis HOM05D000332 ORTHO05D000268 1.4e-07 59.3 50 52.0
Cpa.g.sc13.70 Carica papaya HOM05D000332 ORTHO05D000268 1.4e-07 59.3 56 48.2
Nitab4.5_0000410g0240 Nicotiana tabacum HOM05D000332 ORTHO05D000268 1.4e-07 59.3 55 47.3
AL1G55770 Arabidopsis lyrata HOM05D000332 ORTHO05D000268 1.8e-07 58.9 62 40.3
Carub.0001s3811 Capsella rubella HOM05D000332 ORTHO05D000268 1.8e-07 58.9 56 46.4
Lalb_Chr02g0158011 Lupinus albus HOM05D000332 ORTHO05D000268 1.8e-07 58.9 63 42.9
Ciclev10024508m.g Citrus clementina HOM05D000332 ORTHO05D000268 2.3e-07 58.5 64 45.3
FAN08G2654 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.3e-07 58.5 60 43.3
Potri.001G338800 Populus trichocarpa HOM05D000332 ORTHO05D000268 2.3e-07 58.5 54 44.4
Sopen03g038740 Solanum pennellii HOM05D000332 ORTHO05D000268 2.3e-07 58.5 54 46.3
GSVIVG01008220001 Vitis vinifera HOM05D000332 ORTHO05D000268 2.3e-07 58.5 54 44.4
CDE09G0013 Ceratophyllum demersum HOM05D000332 ORTHO05D000268 3.0e-07 58.2 42 59.5
Peaxi162Scf00015g00537 Petunia axillaris HOM05D000332 ORTHO05D000268 3.0e-07 58.2 56 46.4
Rhsim12G0145200 Rhododendron simsii HOM05D000332 ORTHO05D000268 3.0e-07 58.2 50 48.0
vmacro16459 Vaccinium macrocarpon HOM05D000332 ORTHO05D000268 3.0e-07 58.2 50 48.0
GSVIVG01003978001 Vitis vinifera HOM05D000332 ORTHO05D000268 3.0e-07 58.2 56 46.4
AT1G48940 Arabidopsis thaliana HOM05D000332 ORTHO05D000268 4.0e-07 57.8 44 45.5
Thhalv10012234m.g Eutrema salsugineum HOM05D000332 ORTHO05D000268 4.0e-07 57.8 44 50.0
Lj2g0014628 Lotus japonicus HOM05D000332 ORTHO05D000268 4.0e-07 57.8 56 50.0
CSS0033879 Camellia sinensis var. sinensis HOM05D000332 ORTHO05D000268 5.2e-07 57.4 60 46.7
CSS0039218 Camellia sinensis var. sinensis HOM05D000332 ORTHO05D000268 5.2e-07 57.4 60 46.7
Ciclev10017887m.g Citrus clementina HOM05D000332 ORTHO05D000268 5.2e-07 57.4 61 42.6
Medtr6g022170 Medicago truncatula HOM05D000332 ORTHO05D000268 5.2e-07 57.4 56 51.8
Nitab4.5_0001031g0250 Nicotiana tabacum HOM05D000332 ORTHO05D000268 5.2e-07 57.4 63 46.0
TPR.G7865 Trifolium pratense HOM05D000332 ORTHO05D000268 5.2e-07 57.4 57 49.1
BcaC01g03689 Brassica carinata HOM05D000332 ORTHO05D000268 6.7e-07 57.0 37 59.5
CAN.G587.73 Capsicum annuum HOM05D000332 ORTHO05D000268 6.7e-07 57.0 59 44.1
CsaV3_5G026830 Cucumis sativus L. HOM05D000332 ORTHO05D000268 6.7e-07 57.0 63 46.0
Nitab4.5_0005020g0030 Nicotiana tabacum HOM05D000332 ORTHO05D000268 6.7e-07 57.0 56 48.2
Sabra16G0219400 Salix brachista HOM05D000332 ORTHO05D000268 6.7e-07 57.0 64 37.5
Thecc.03G115500 Theobroma cacao HOM05D000332 ORTHO05D000268 6.7e-07 57.0 50 52.0
Aqoxy5G01375 Aquilegia oxysepala HOM05D000332 ORTHO05D000268 8.8e-07 56.6 56 50.0
A01p35850 Brassica napus HOM05D000332 ORTHO05D000268 8.8e-07 56.6 42 57.1
Nitab4.5_0001432g0140 Nicotiana tabacum HOM05D000332 ORTHO05D000268 8.8e-07 56.6 56 48.2
EL10Ac4g07559 Beta vulgaris HOM05D000332 ORTHO05D000268 1.2e-06 56.2 55 49.1
Hma1.2p1_0818F.1_g223480 Hydrangea macrophylla HOM05D000332 ORTHO05D000268 1.2e-06 56.2 56 46.4
Nn4g22486 Nelumbo nucifera HOM05D000332 ORTHO05D000268 1.2e-06 56.2 54 44.4
Sabra15G0075600 Salix brachista HOM05D000332 ORTHO05D000268 1.2e-06 56.2 57 47.4
CANSAT64G0972 Cannabis sativa HOM05D000332 ORTHO05D000268 1.5e-06 55.8 61 49.2
CAN.G473.45 Capsicum annuum HOM05D000332 ORTHO05D000268 2.0e-06 55.5 63 39.7
Manes.17G108600 Manihot esculenta HOM05D000332 ORTHO05D000268 2.0e-06 55.5 56 41.1
BraA01t03664Z Brassica rapa HOM05D000332 ORTHO05D000268 2.6e-06 55.1 42 57.1
CAN.G438.103 Capsicum annuum HOM05D000332 ORTHO05D000268 2.6e-06 55.1 55 49.1
Cfa019840 Carpinus fangiana HOM05D003233 ORTHO05D003694 2.6e-06 55.1 33 66.7
HPP92_003449 Vanilla planifolia HOM05D000332 ORTHO05D000268 2.6e-06 55.1 57 43.9
Actinidia18429 Actinidia chinensis HOM05D000332 ORTHO05D000268 3.3e-06 54.7 59 44.1
CDE02G2812 Ceratophyllum demersum HOM05D000332 ORTHO05D000268 3.3e-06 54.7 55 49.1
Lju41C45T4 Lonicera japonica HOM05D000332 ORTHO05D000268 3.3e-06 54.7 64 40.6
Potri.015G052000 Populus trichocarpa HOM05D000332 ORTHO05D000268 3.3e-06 54.7 57 47.4
SalBow8G4631 Salvia bowleyana HOM05D000332 ORTHO05D000268 3.3e-06 54.7 53 50.9
TWI36G0809 Tripterygium wilfordii HOM05D000332 ORTHO05D000268 3.3e-06 54.7 51 49.0
BcaB06g25907 Brassica carinata HOM05D000332 ORTHO05D000268 5.7e-06 53.9 42 50.0
CDE02G3113 Ceratophyllum demersum HOM05D000332 ORTHO05D000268 5.7e-06 53.9 59 37.3
Eucgr.K02648 Eucalyptus grandis HOM05D000332 ORTHO05D000268 5.7e-06 53.9 56 42.9
Psat1g083120 Pisum sativum HOM05D000332 ORTHO05D000268 5.7e-06 53.9 57 47.4
QL02p073408 Quercus lobata HOM05D000332 ORTHO05D000268 5.7e-06 53.9 56 41.1
TAR371G0731 Trochodendron aralioides HOM05D000332 ORTHO05D000268 5.7e-06 53.9 56 44.6
Aqoxy3G01323 Aquilegia oxysepala HOM05D000332 ORTHO05D000268 7.5e-06 53.5 54 44.4
CANSAT80G1530 Cannabis sativa HOM05D000332 ORTHO05D000268 7.5e-06 53.5 59 39.0
FvH4_6g52240 Fragaria vesca HOM05D000332 ORTHO05D000268 7.5e-06 53.5 61 41.0
FAN02G2398 Fragaria x ananassa HOM05D000332 ORTHO05D000268 7.5e-06 53.5 61 41.0
FAN05G1333 Fragaria x ananassa HOM05D000332 ORTHO05D000268 7.5e-06 53.5 61 41.0
FAN09G1209 Fragaria x ananassa HOM05D000332 ORTHO05D000268 7.5e-06 53.5 61 41.0
MBI06_g14856_MAGBIO Magnolia biondii HOM05D000332 ORTHO05D000268 7.5e-06 53.5 58 41.4
Rhsim10G0012600 Rhododendron simsii HOM05D000332 ORTHO05D000268 7.5e-06 53.5 54 53.7
Actinidia18948 Actinidia chinensis HOM05D000332 ORTHO05D000268 9.7e-06 53.1 56 50.0
CANSAT56G3416 Cannabis sativa HOM05D000332 ORTHO05D000268 9.7e-06 53.1 40 45.0
Migut.K01428 Erythranthe guttata HOM05D000332 ORTHO05D000268 9.7e-06 53.1 39 56.4
FAN14G5975 Fragaria x ananassa HOM05D000332 ORTHO05D000268 9.7e-06 53.1 61 41.0
HanXRQChr09g0269831 Helianthus annuus HOM05D000332 ORTHO05D000268 9.7e-06 53.1 54 50.0
vmacro11594 Vaccinium macrocarpon HOM05D000332 ORTHO05D000268 9.7e-06 53.1 66 42.4


User provided reference genes

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