Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 1.1e-137 493.4 263 100.0
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 5.0e-71 271.9 184 84.2
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 2.1e-69 266.5 175 81.7
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 2.8e-66 256.1 190 79.5
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 2.4e-65 253.1 187 72.7
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 4.5e-64 248.8 209 71.3
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 2.9e-63 246.1 187 71.7
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 5.0e-63 245.4 187 71.1
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 6.1e-61 238.4 177 74.6
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 1.2e-56 224.2 188 70.7
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 4.7e-53 212.2 175 68.6
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 1.1e-52 211.1 190 60.5
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 1.4e-52 210.7 188 64.9
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 2.3e-52 209.9 175 66.9
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 3.1e-52 209.5 173 65.3
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 6.8e-52 208.4 175 67.4
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 4.4e-51 205.7 176 65.3
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 7.5e-51 204.9 191 62.8
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.2e-50 203.4 191 62.3
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.2e-50 203.4 191 62.8
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.9e-50 203.0 191 62.8
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 4.9e-50 202.2 191 60.2
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 1.1e-49 201.1 181 61.9
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 1.4e-49 200.7 178 61.8
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 3.2e-49 199.5 178 62.4
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 4.1e-49 199.1 185 56.8
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 1.2e-48 197.6 173 61.8
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 1.2e-48 197.6 186 58.6
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 1.6e-48 197.2 196 55.1
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 2.0e-48 196.8 186 58.6
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 2.7e-48 196.4 187 58.8
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 3.5e-48 196.1 185 57.3
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 3.5e-48 196.1 192 59.9
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 6.0e-48 195.3 185 56.8
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 7.8e-48 194.9 173 60.1
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 1.0e-47 194.5 188 57.4
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 1.3e-47 194.1 187 58.8
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 5.0e-47 192.2 173 60.7
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 5.0e-47 192.2 192 58.3
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 6.6e-47 191.8 190 59.5
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 6.6e-47 191.8 187 56.7
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 8.6e-47 191.4 193 54.4
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 8.6e-47 191.4 187 56.1
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 1.1e-46 191.0 185 56.8
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 1.1e-46 191.0 198 54.0
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 1.5e-46 190.7 182 58.2
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 1.5e-46 190.7 189 55.6
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 1.9e-46 190.3 175 60.6
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 1.9e-46 190.3 191 56.5
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 3.3e-46 189.5 182 57.7
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 5.6e-46 188.7 198 53.5
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 7.3e-46 188.3 188 54.3
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 9.5e-46 188.0 176 60.8
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 9.5e-46 188.0 179 58.7
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 9.5e-46 188.0 185 56.2
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 2.1e-45 186.8 191 51.8
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 2.8e-45 186.4 188 54.8
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 2.8e-45 186.4 173 63.0
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 3.6e-45 186.0 194 55.2
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 6.2e-45 185.3 175 57.7
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 8.1e-45 184.9 187 55.6
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 4.0e-44 182.6 188 55.3
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 5.2e-44 182.2 199 58.8
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 5.2e-44 182.2 176 58.5
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 2.6e-43 179.9 173 57.8
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 9.9e-43 177.9 193 52.8
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 1.7e-42 177.2 176 55.7
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 2.9e-42 176.4 193 52.3
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 6.4e-42 175.3 169 59.2
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 8.3e-42 174.9 171 55.0
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 1.9e-41 173.7 170 52.4
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 5.4e-41 172.2 192 51.6
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 7.1e-41 171.8 186 52.2
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.6e-40 170.6 180 52.8
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 2.7e-40 169.9 183 50.3
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 4.6e-40 169.1 183 51.4
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 4.6e-40 169.1 196 50.5
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 1.0e-39 167.9 191 52.4
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 1.0e-39 167.9 191 52.4
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 1.0e-39 167.9 191 52.4
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 2.3e-39 166.8 173 53.2
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 2.3e-39 166.8 195 49.2
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 2.3e-39 166.8 141 63.1
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 3.9e-39 166.0 181 54.7
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 5.1e-39 165.6 184 56.0
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 8.6e-39 164.9 191 51.3
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 1.1e-38 164.5 181 50.8
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 1.5e-38 164.1 190 48.9
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 1.9e-38 163.7 191 51.3
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 3.3e-38 162.9 260 45.0
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 4.3e-38 162.5 183 55.2
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 7.3e-38 161.8 193 51.8
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 1.2e-37 161.0 185 50.8
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 2.8e-37 159.8 183 49.2
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 3.6e-37 159.5 190 53.7
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 3.6e-37 159.5 190 53.7
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 3.6e-37 159.5 190 53.7
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 3.6e-37 159.5 194 49.5
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 4.7e-37 159.1 191 51.8
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 4.7e-37 159.1 226 44.7
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 8.1e-37 158.3 190 47.9
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 1.8e-36 157.1 195 50.8
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 2.4e-36 156.8 190 47.4
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 1.5e-35 154.1 190 45.8
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 2.0e-35 153.7 119 68.1
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 2.0e-35 153.7 168 53.0
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 3.4e-35 152.9 186 52.2
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 3.4e-35 152.9 119 64.7
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 9.9e-35 151.4 200 45.5
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 9.9e-35 151.4 183 48.1
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 9.9e-35 151.4 119 68.9
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 1.9e-33 147.1 125 60.0
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 5.4e-33 145.6 120 63.3
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 1.0e-31 141.4 217 45.6
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 1.3e-31 141.0 191 45.0
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 5.1e-31 139.0 119 62.2
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 4.7e-29 132.5 114 63.2
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 8.1e-29 131.7 99 75.8
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 1.1e-28 131.3 152 49.3
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 1.8e-28 130.6 139 51.8
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 4.0e-28 129.4 173 46.2
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 6.9e-28 128.6 120 55.8
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 1.1e-25 121.3 175 43.4
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 2.4e-25 120.2 149 47.7
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 3.9e-23 112.8 118 53.4
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 6.6e-23 112.1 111 59.5
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 6.9e-20 102.1 179 36.3
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 3.4e-19 99.8 98 62.2
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 1.9e-14 84.0 104 46.2
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 9.6e-14 81.6 87 49.4
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 9.6e-14 81.6 76 56.6
Medtr5g047050 Medicago truncatula HOM05D001012 ORTHO05D002597 6.4e-10 68.9 120 31.7
TPR.G38561 Trifolium pratense HOM05D001012 ORTHO05D002597 4.2e-09 66.2 120 32.5
Ca_05056_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 5.5e-09 65.9 120 31.7
Psat2g093600 Pisum sativum HOM05D001012 ORTHO05D002597 5.5e-09 65.9 120 32.5
Lj2g0027117 Lotus japonicus HOM05D001012 ORTHO05D002597 9.3e-09 65.1 120 32.5
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 1.2e-08 64.7 71 50.7
arahy.Tifrunner.gnm1.ann1.QD4C18 Arachis hypogaea HOM05D001012 ORTHO05D002597 2.1e-08 63.9 120 32.5
arahy.Tifrunner.gnm1.ann1.WE17ZA Arachis hypogaea HOM05D001012 ORTHO05D002597 2.1e-08 63.9 120 32.5
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 3.5e-08 63.2 40 72.5
Glyma.02G121800 Glycine max HOM05D001012 ORTHO05D002597 1.8e-07 60.8 120 30.0
Phvul.003G038900 Phaseolus vulgaris HOM05D001012 ORTHO05D002597 3.0e-07 60.1 121 33.9
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 3.0e-07 60.1 60 55.0
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 3.9e-07 59.7 60 55.0
SMO145G0122 Selaginella moellendorffii HOM05D001012 ORTHO05D002597 5.1e-07 59.3 124 32.3
VMungo1215G3431 Vigna mungo HOM05D001012 ORTHO05D002597 6.7e-07 58.9 121 33.1
Mapoly0056s0094 Marchantia polymorpha HOM05D001012 ORTHO05D004721 8.7e-07 58.5 153 30.7
Lalb_Chr17g0341401 Lupinus albus HOM05D001012 ORTHO05D002597 1.1e-06 58.2 120 27.5
Potri.010G140200 Populus trichocarpa HOM05D001012 ORTHO05D002597 1.5e-06 57.8 120 30.0
Sabra10G0108300 Salix brachista HOM05D001012 ORTHO05D002597 1.9e-06 57.4 120 29.2
SEGI_33553 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 1.9e-06 57.4 121 31.4
CDE10G0510 Ceratophyllum demersum HOM05D001012 ORTHO05D002597 2.5e-06 57.0 117 27.4
Actinidia13401 Actinidia chinensis HOM05D001012 ORTHO05D002597 3.3e-06 56.6 120 29.2
Manes.01G025500 Manihot esculenta HOM05D001012 ORTHO05D002597 4.3e-06 56.2 158 29.1
SMO139G0062 Selaginella moellendorffii HOM05D001012 ORTHO05D004721 4.3e-06 56.2 142 29.6
TWI81G0138 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 4.3e-06 56.2 120 30.8
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 5.6e-06 55.8 122 27.9
SEGI_09085 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 5.6e-06 55.8 117 33.3
DCAR_002900 Daucus carota HOM05D000483 ORTHO05D000158 7.4e-06 55.5 162 29.6


User provided reference genes

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