Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 4.5e-112 407.9 204 100.0
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.0e-67 259.6 205 70.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.7e-66 256.5 204 71.1
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 5.1e-55 218.4 201 59.7
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 7.9e-48 194.5 207 54.6
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 8.7e-47 191.0 209 55.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.5e-46 189.5 204 55.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.3e-46 188.7 197 54.8
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 4.3e-46 188.7 204 54.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.1e-44 182.6 206 52.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.5e-43 178.7 218 51.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.3e-42 177.2 212 50.9
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 3.8e-42 175.6 203 53.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.9e-41 173.3 220 49.5
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 7.2e-41 171.4 210 50.0
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.6e-40 170.2 199 53.3
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.1e-40 168.3 208 50.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.9e-40 167.9 210 49.5
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-39 167.5 204 52.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 5.1e-39 165.2 207 49.3
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.1e-38 164.1 213 48.8
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.5e-38 163.7 206 48.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.5e-38 163.7 206 47.6
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.5e-38 163.7 220 46.4
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.9e-38 163.3 215 47.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.5e-38 162.9 207 50.2
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 4.3e-38 162.2 214 49.1
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 4.3e-38 162.2 204 48.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.7e-38 161.8 209 51.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.7e-38 161.8 207 51.2
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.6e-37 160.2 207 50.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.2e-37 159.8 195 50.3
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 3.7e-37 159.1 210 46.7
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 4.8e-37 158.7 204 47.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.4e-36 157.1 216 47.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 5.3e-36 155.2 204 47.5
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.2e-35 154.1 170 55.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.4e-35 152.5 223 47.1
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.3e-34 150.6 205 47.8
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.0e-34 148.7 201 46.8
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.5e-34 148.3 201 47.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.5e-34 148.3 219 45.2
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.1e-33 147.5 209 47.8
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.1e-33 147.5 127 66.1
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 3.2e-33 146.0 213 44.6
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.2e-33 146.0 203 48.3
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 4.2e-33 145.6 201 45.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 5.5e-33 145.2 198 43.9
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 5.5e-33 145.2 194 46.9
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-32 144.1 210 44.3
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.6e-32 142.1 225 44.9
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 6.1e-32 141.7 214 44.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.1e-32 141.7 214 44.4
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.1e-32 141.7 214 44.4
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-31 141.0 225 44.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.8e-31 140.2 222 45.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-31 140.2 225 44.4
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 3.0e-31 139.4 187 46.5
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.7e-31 138.3 220 43.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.7e-31 138.3 198 45.5
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.1e-30 137.5 204 45.6
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-30 137.1 186 44.6
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.5e-30 137.1 213 43.7
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.0e-30 136.7 206 44.2
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.3e-30 135.6 199 45.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.7e-30 135.2 199 45.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.7e-29 133.7 203 43.8
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.7e-29 133.7 198 44.4
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.7e-29 133.7 195 42.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.8e-29 132.9 203 45.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.7e-29 132.5 205 44.4
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 3.7e-29 132.5 197 44.7
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 6.3e-29 131.7 205 42.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 8.2e-29 131.3 217 41.9
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.4e-28 130.6 218 44.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.4e-28 130.6 183 43.7
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 5.3e-28 128.6 222 41.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.3e-28 128.6 207 42.0
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 6.9e-28 128.3 202 42.6
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.2e-27 127.5 200 42.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.5e-27 127.1 197 43.1
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.0e-27 126.7 206 41.7
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.0e-27 126.7 181 45.3
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.4e-27 125.9 218 41.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.2e-26 123.2 191 45.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.9e-26 122.9 213 40.8
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.9e-26 122.9 209 40.7
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 5.0e-26 122.1 185 40.5
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.0e-26 122.1 192 41.1
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.4e-25 120.6 231 39.4
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.4e-25 120.6 219 40.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.9e-25 120.2 207 40.1
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.2e-25 119.4 202 41.1
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 4.2e-25 119.0 205 41.5
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.5e-25 118.6 198 41.4
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.4e-25 117.9 203 42.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 9.4e-25 117.9 204 41.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.7e-24 116.3 193 42.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.6e-24 115.9 199 40.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.7e-24 115.5 185 43.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 4.7e-24 115.5 199 41.2
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.9e-24 114.8 194 41.8
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.4e-23 114.0 203 39.9
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.4e-23 114.0 186 40.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.3e-23 113.2 193 39.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 3.0e-23 112.8 206 39.3
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.9e-23 112.5 213 39.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.2e-23 112.1 198 41.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.2e-23 112.1 198 41.4
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 8.8e-23 111.3 195 41.0
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-22 110.9 215 37.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-22 110.5 197 40.6
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-22 110.2 187 42.2
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.0e-22 110.2 196 40.3
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.0e-22 110.2 200 40.0
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.6e-22 109.8 215 38.1
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 2.6e-22 109.8 150 46.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.6e-22 109.8 197 40.6
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 3.3e-22 109.4 194 41.8
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.4e-22 109.0 186 41.4
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 4.4e-22 109.0 217 37.8
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.4e-22 108.2 185 41.6
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 7.4e-22 108.2 186 40.9
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 9.7e-22 107.8 186 39.8
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.3e-21 107.5 214 38.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.7e-21 107.1 193 38.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.7e-21 107.1 195 40.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.7e-21 107.1 216 37.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.2e-21 106.7 204 40.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.8e-21 106.3 186 40.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.8e-21 106.3 182 37.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.7e-21 105.9 215 37.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.8e-21 105.5 190 38.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.8e-21 105.5 194 41.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.8e-21 105.5 195 38.5
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 4.8e-21 105.5 192 42.7
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 8.2e-21 104.8 193 36.3
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.1e-20 102.8 203 36.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 4.1e-20 102.4 192 38.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 4.1e-20 102.4 143 44.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 5.3e-20 102.1 179 41.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 5.3e-20 102.1 194 37.6
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 5.3e-20 102.1 186 39.8
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-19 100.9 192 38.0
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.0e-19 100.1 157 39.5
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 4.5e-19 99.0 211 35.5
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 5.9e-19 98.6 182 37.9
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.3e-18 97.4 156 39.1
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-18 97.1 180 37.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.2e-18 96.7 169 36.1
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.9e-18 96.3 167 38.9
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-18 95.9 181 39.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.0e-18 95.5 137 43.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 7.2e-17 91.7 190 39.5
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.1e-16 90.1 184 41.3
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.7e-16 89.7 181 39.2
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-16 89.0 200 34.0
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 4.7e-16 89.0 200 34.0
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 6.1e-16 88.6 201 33.8
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.3e-15 86.7 144 41.0
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-15 85.1 193 38.3
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-14 84.3 199 38.2
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-14 84.3 192 36.5
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 3.3e-14 82.8 117 40.2
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.8e-13 79.0 284 29.6
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.1e-12 77.8 190 34.7
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-12 77.8 91 50.5
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.4e-12 77.4 163 35.0
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.8e-12 77.0 148 33.8
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-12 76.6 193 34.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-12 76.6 190 34.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 4.1e-12 75.9 194 34.5
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 5.3e-12 75.5 187 33.7
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.0e-12 75.1 147 35.4
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 9.1e-12 74.7 164 37.2
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.7e-11 71.6 188 34.0
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-10 70.9 119 37.0
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.2e-10 70.1 193 35.8
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.5e-10 68.6 170 32.4
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.2e-06 57.8 129 34.9


User provided reference genes

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