Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27744 Trifolium pratense HOM05D001434 ORTHO05D004586 6.7e-37 156.8 75 100.0
TPR.G1225 Trifolium pratense HOM05D001434 ORTHO05D004586 2.8e-35 151.4 75 98.7
Psat0s3384g0040 Pisum sativum HOM05D001434 ORTHO05D004586 7.7e-33 143.3 75 93.3
Medtr5g093230 Medicago truncatula HOM05D001434 ORTHO05D004586 6.1e-30 133.7 75 89.3
LjContig00272g0017225 Lotus japonicus HOM05D001434 ORTHO05D004586 3.3e-28 127.9 75 82.7
VMungo0647G2168 Vigna mungo HOM05D001434 ORTHO05D004586 7.4e-28 126.7 74 83.8
Ca_06331_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 1.3e-27 125.9 75 82.7
Ca_30702_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 1.3e-27 125.9 75 82.7
Glyma.02G292300 Glycine max HOM05D001434 ORTHO05D004586 8.2e-27 123.2 75 81.3
Glyma.08G319100 Glycine max HOM05D001434 ORTHO05D004586 2.4e-26 121.7 73 80.8
Glyma.18G094400 Glycine max HOM05D001434 ORTHO05D004586 3.1e-26 121.3 73 80.8
Lalb_Chr15g0081441 Lupinus albus HOM05D001434 ORTHO05D004586 4.1e-26 120.9 75 76.0
arahy.Tifrunner.gnm1.ann1.09LR4A Arachis hypogaea HOM05D001434 ORTHO05D004586 1.5e-25 119.0 67 82.1
arahy.Tifrunner.gnm1.ann1.0VB874 Arachis hypogaea HOM05D001434 ORTHO05D004586 4.5e-25 117.5 67 80.6
Phvul.006G046200 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 4.5e-25 117.5 73 76.7
Phvul.008G269100 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 4.5e-25 117.5 74 75.7
QL08p009425 Quercus lobata HOM05D001434 ORTHO05D004586 5.9e-25 117.1 73 75.3
Haze_09703 Corylus avellana HOM05D001434 ORTHO05D004586 7.7e-25 116.7 74 75.7
Lj6g0020939 Lotus japonicus HOM05D001434 ORTHO05D004586 2.2e-24 115.2 73 75.3
Lalb_Chr17g0348531 Lupinus albus HOM05D001434 ORTHO05D004586 2.9e-24 114.8 75 77.3
Glyma.14G022300 Glycine max HOM05D001434 ORTHO05D004586 5.0e-24 114.0 63 87.3
Medtr3g052790 Medicago truncatula HOM05D001434 ORTHO05D004586 5.0e-24 114.0 73 75.3
arahy.Tifrunner.gnm1.ann1.QFUU5V Arachis hypogaea HOM05D001434 ORTHO05D004586 1.1e-23 112.8 75 76.0
arahy.Tifrunner.gnm1.ann1.MF778S Arachis hypogaea HOM05D001434 ORTHO05D004586 1.4e-23 112.5 75 76.0
Psat5g174680 Pisum sativum HOM05D001434 ORTHO05D004586 1.9e-23 112.1 73 75.3
Cfa020319 Carpinus fangiana HOM05D001434 ORTHO05D004586 2.5e-23 111.7 73 74.0
VMungo0540G0244 Vigna mungo HOM05D001434 ORTHO05D004586 3.2e-23 111.3 73 74.0
Ca_14751_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 5.5e-23 110.5 73 75.3
Rhsim06G0219000 Rhododendron simsii HOM05D001434 ORTHO05D004586 7.2e-23 110.2 74 73.0
Dinv40771 Davidia involucrata HOM05D001434 ORTHO05D004586 1.2e-22 109.4 75 73.3
Prupe.4G216600 Prunus persica HOM05D001434 ORTHO05D004586 1.6e-22 109.0 74 74.3
CANSAT11G2014 Cannabis sativa HOM05D001434 ORTHO05D004586 3.6e-22 107.8 65 80.0
MD03G1198400 Malus domestica HOM05D001434 ORTHO05D004586 6.1e-22 107.1 74 73.0
MD11G1214500 Malus domestica HOM05D001434 ORTHO05D004586 1.0e-21 106.3 74 75.7
Dinv22250 Davidia involucrata HOM05D001434 ORTHO05D004586 1.4e-21 105.9 75 69.3
CANSAT11G2500 Cannabis sativa HOM05D001434 ORTHO05D004586 1.8e-21 105.5 65 78.5
Manes.03G131600 Manihot esculenta HOM05D001434 ORTHO05D004586 2.3e-21 105.1 74 67.6
Sabra11G0093800 Salix brachista HOM05D001434 ORTHO05D004586 2.3e-21 105.1 73 69.9
Potri.011G089300 Populus trichocarpa HOM05D001434 ORTHO05D004586 3.9e-21 104.4 74 68.9
MELO3C014157.2 Cucumis melo HOM05D001434 ORTHO05D004586 6.7e-21 103.6 73 68.5
Nn1g03482 Nelumbo nucifera HOM05D001434 ORTHO05D004586 6.7e-21 103.6 75 72.0
PGR031G3770 Punica granatum HOM05D001434 ORTHO05D004586 1.1e-20 102.8 74 67.6
TWI38G0863 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 1.1e-20 102.8 75 65.3
CsaV3_3G004600 Cucumis sativus L. HOM05D001434 ORTHO05D004586 1.5e-20 102.4 73 67.1
Eucgr.F00743 Eucalyptus grandis HOM05D001434 ORTHO05D004586 1.5e-20 102.4 62 80.6
RcHm_v2.0_Chr5g0040501 Rosa chinensis HOM05D001434 ORTHO05D004586 1.5e-20 102.4 74 68.9
Manes.15G070100 Manihot esculenta HOM05D001434 ORTHO05D004586 2.0e-20 102.1 74 67.6
COL.COLO4_09683 Corchorus olitorius HOM05D001434 ORTHO05D004586 3.3e-20 101.3 63 76.2
vmacro02222 Vaccinium macrocarpon HOM05D001434 ORTHO05D004586 3.3e-20 101.3 74 68.9
Sc16g0005900 Simmondsia chinensis HOM05D001434 ORTHO05D004586 4.4e-20 100.9 64 75.0
Actinidia05085 Actinidia chinensis HOM05D001434 ORTHO05D004586 5.7e-20 100.5 75 65.3
Actinidia08342 Actinidia chinensis HOM05D001434 ORTHO05D004586 5.7e-20 100.5 75 65.3
Duzib213G0248 Durio zibethinus HOM05D001434 ORTHO05D004586 5.7e-20 100.5 75 68.0
Thecc.07G033300 Theobroma cacao HOM05D001434 ORTHO05D004586 5.7e-20 100.5 65 73.8
CSS0024501 Camellia sinensis var. sinensis HOM05D001434 ORTHO05D004586 7.4e-20 100.1 75 65.3
FvH4_3g23020 Fragaria vesca HOM05D001434 ORTHO05D004586 9.7e-20 99.8 63 74.6
CiPaw.12G131400 Carya illinoinensis HOM05D001434 ORTHO05D004586 1.3e-19 99.4 67 71.6
DCAR_016715 Daucus carota HOM05D001434 ORTHO05D004586 1.3e-19 99.4 74 63.5
Actinidia32254 Actinidia chinensis HOM05D001434 ORTHO05D004586 2.2e-19 98.6 75 62.7
FAN16G0031 Fragaria x ananassa HOM05D001434 ORTHO05D004586 2.2e-19 98.6 63 73.0
Sed0001205 Sechium edule HOM05D001434 ORTHO05D004586 2.2e-19 98.6 65 72.3
PGSC0003DMG400022311 Solanum tuberosum HOM05D001434 ORTHO05D004586 2.2e-19 98.6 69 69.6
TPR.G33786 Trifolium pratense HOM05D001434 ORTHO05D004586 2.2e-19 98.6 73 65.8
TWI39G0476 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 2.2e-19 98.6 75 61.3
FAN21G1927 Fragaria x ananassa HOM05D001434 ORTHO05D004586 2.8e-19 98.2 63 73.0
Atru.chr2.3480 Acer truncatum HOM05D001434 ORTHO05D004586 3.7e-19 97.8 64 73.4
Ciclev10007601m.g Citrus clementina HOM05D001434 ORTHO05D004586 3.7e-19 97.8 75 65.3
FAN11G3048 Fragaria x ananassa HOM05D001434 ORTHO05D004586 3.7e-19 97.8 63 73.0
FAN25G2752 Fragaria x ananassa HOM05D001434 ORTHO05D004586 3.7e-19 97.8 63 73.0
FAN25G2755 Fragaria x ananassa HOM05D001434 ORTHO05D004586 3.7e-19 97.8 63 73.0
Sc03g0008500 Simmondsia chinensis HOM05D001434 ORTHO05D004586 3.7e-19 97.8 64 68.8
Sopen07g032940 Solanum pennellii HOM05D001434 ORTHO05D004586 3.7e-19 97.8 69 68.1
GSVIVG01037676001 Vitis vinifera HOM05D001434 ORTHO05D004586 3.7e-19 97.8 65 72.3
Lalb_Chr04g0248331 Lupinus albus HOM05D001434 ORTHO05D004586 4.8e-19 97.4 75 69.3
Nn1g07173 Nelumbo nucifera HOM05D001434 ORTHO05D004586 4.8e-19 97.4 75 64.0
Sed0002781 Sechium edule HOM05D001434 ORTHO05D004586 6.3e-19 97.1 65 70.8
TAR624G0691 Trochodendron aralioides HOM05D001434 ORTHO05D004586 6.3e-19 97.1 63 77.8
MBI02_g25402_MAGBIO Magnolia biondii HOM05D001434 ORTHO05D004586 8.2e-19 96.7 63 74.6
Hma1.2p1_0235F.1_g098670 Hydrangea macrophylla HOM05D001434 ORTHO05D004586 1.1e-18 96.3 75 60.0
Hma1.2p1_0473F.1_g160045 Hydrangea macrophylla HOM05D001434 ORTHO05D004586 1.1e-18 96.3 75 60.0
THA.LOC104817673 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 1.4e-18 95.9 74 64.9
AUR62020408 Chenopodium quinoa HOM05D001434 ORTHO05D004586 1.8e-18 95.5 82 59.8
Gohir.A04G013800 Gossypium hirsutum HOM05D001434 ORTHO05D004586 1.8e-18 95.5 75 66.7
Gohir.D05G372500 Gossypium hirsutum HOM05D001434 ORTHO05D004586 1.8e-18 95.5 75 66.7
Solyc07g064740.3 Solanum lycopersicum HOM05D001434 ORTHO05D004586 1.8e-18 95.5 69 66.7
SGA_v2.0_scaffold8G04338 Striga asiatica HOM05D001434 ORTHO05D004586 3.1e-18 94.7 72 65.3
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 3.1e-18 94.7 77 64.9
Cpa.g.sc12.281 Carica papaya HOM05D001434 ORTHO05D004586 4.1e-18 94.4 75 66.7
Lj1A875G28 Lonicera japonica HOM05D001434 ORTHO05D004586 7.0e-18 93.6 70 61.4
THA.LOC104811616 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 7.0e-18 93.6 74 63.5
CAN.G337.77 Capsicum annuum HOM05D001434 ORTHO05D004586 9.1e-18 93.2 69 66.7
AUR62015810 Chenopodium quinoa HOM05D001434 ORTHO05D004586 9.1e-18 93.2 82 58.5
Nitab4.5_0000328g0030 Nicotiana tabacum HOM05D001434 ORTHO05D004586 9.1e-18 93.2 65 69.2
Nitab4.5_0002287g0060 Nicotiana tabacum HOM05D001434 ORTHO05D004586 9.1e-18 93.2 65 69.2
PSO541G5896 Papaver somniferum HOM05D001434 ORTHO05D004586 9.1e-18 93.2 63 73.0
PSO675G6219 Papaver somniferum HOM05D001434 ORTHO05D004586 9.1e-18 93.2 63 73.0
Peaxi162Scf00235g00421 Petunia axillaris HOM05D001434 ORTHO05D004586 9.1e-18 93.2 68 66.2
HPP92_012415 Vanilla planifolia HOM05D001434 ORTHO05D004586 9.1e-18 93.2 79 59.5
EL10Ac4g07774 Beta vulgaris HOM05D001434 ORTHO05D004586 1.2e-17 92.8 82 59.8
Gorai.009G440800 Gossypium raimondii HOM05D001434 ORTHO05D004586 1.2e-17 92.8 74 66.2
Ah.06g182830 Amaranthus hybridus HOM05D001434 ORTHO05D004586 1.6e-17 92.4 82 57.3
Thhalv10012904m.g Eutrema salsugineum HOM05D001434 ORTHO05D004586 1.6e-17 92.4 75 62.7
Gohir.A01G081200 Gossypium hirsutum HOM05D001434 ORTHO05D004586 1.6e-17 92.4 65 69.2
Sp6g17000 Schrenkiella parvula HOM05D001434 ORTHO05D004586 2.0e-17 92.0 76 63.2
Aqoxy1G03123 Aquilegia oxysepala HOM05D001434 ORTHO05D004586 2.6e-17 91.7 74 60.8
Gohir.D01G068300 Gossypium hirsutum HOM05D001434 ORTHO05D004586 2.6e-17 91.7 62 71.0
Gorai.002G090300 Gossypium raimondii HOM05D001434 ORTHO05D004586 2.6e-17 91.7 62 71.0
AT5G55060 Arabidopsis thaliana HOM05D001434 ORTHO05D004586 3.5e-17 91.3 74 64.9
BcaB08g35869 Brassica carinata HOM05D001434 ORTHO05D004586 4.5e-17 90.9 74 62.2
BcaC04g20273 Brassica carinata HOM05D001434 ORTHO05D004586 4.5e-17 90.9 74 62.2
A10p12360 Brassica napus HOM05D001434 ORTHO05D004586 4.5e-17 90.9 74 62.2
C09p45620 Brassica napus HOM05D001434 ORTHO05D004586 4.5e-17 90.9 74 62.2
BolC9t57432H Brassica oleracea HOM05D001434 ORTHO05D004586 4.5e-17 90.9 74 62.2
BraA10t43329Z Brassica rapa HOM05D001434 ORTHO05D004586 4.5e-17 90.9 74 62.2
Carub.0008s1533 Capsella rubella HOM05D001434 ORTHO05D004586 4.5e-17 90.9 81 60.5
Ah.04g166010 Amaranthus hybridus HOM05D001434 ORTHO05D004586 5.9e-17 90.5 83 60.2
Hund23230 Selenicereus undatus HOM05D001434 ORTHO05D004586 7.7e-17 90.1 82 56.1
MSTRG.12984 Avicennia marina HOM05D001434 ORTHO05D004586 1.3e-16 89.4 64 65.6
Cc05_g13980 Coffea canephora HOM05D001434 ORTHO05D004586 1.3e-16 89.4 75 61.3
HanXRQChr05g0159431 Helianthus annuus HOM05D001434 ORTHO05D004586 1.3e-16 89.4 78 56.4
Pp3c24_7080 Physcomitrium patens HOM05D001434 ORTHO05D004586 1.3e-16 89.4 59 66.1
Aa31LG3G10990 Aethionema arabicum HOM05D001434 ORTHO05D004586 2.2e-16 88.6 79 59.5
ATR0794G053 Amborella trichopoda HOM05D001434 ORTHO05D004586 2.2e-16 88.6 60 68.3
ClCG10G004950 Citrullus lanatus HOM05D001434 ORTHO05D004586 2.2e-16 88.6 99 50.5
Migut.H01814 Erythranthe guttata HOM05D001434 ORTHO05D004586 2.2e-16 88.6 72 65.3
Hma1.2p1_1567F.1_g291085 Hydrangea macrophylla HOM05D001434 ORTHO05D004586 2.2e-16 88.6 62 66.1
Hma1.2p1_2633F.1_g325795 Hydrangea macrophylla HOM05D001434 ORTHO05D004586 2.2e-16 88.6 62 66.1
AL8G30560 Arabidopsis lyrata HOM05D001434 ORTHO05D004586 2.9e-16 88.2 74 59.5
HanXRQChr11g0336391 Helianthus annuus HOM05D001434 ORTHO05D004586 2.9e-16 88.2 67 64.2
BcaC03g14270 Brassica carinata HOM05D001434 ORTHO05D004586 3.8e-16 87.8 77 63.6
CARHR268410 Cardamine hirsuta HOM05D001434 ORTHO05D004586 3.8e-16 87.8 72 61.1
A03p14290 Brassica napus HOM05D001434 ORTHO05D004586 5.0e-16 87.4 75 62.7
Hund01974 Selenicereus undatus HOM05D001434 ORTHO05D004586 5.0e-16 87.4 83 57.8
C02p16470 Brassica napus HOM05D001434 ORTHO05D004586 1.1e-15 86.3 77 62.3
BolC2t07748H Brassica oleracea HOM05D001434 ORTHO05D004586 1.1e-15 86.3 77 62.3
CDE05G0747 Ceratophyllum demersum HOM05D001434 ORTHO05D004586 1.1e-15 86.3 64 62.5
Lsat_1_v5_gn_7_110060 Lactuca sativa HOM05D001434 ORTHO05D004586 1.1e-15 86.3 61 67.2
Pp3c23_10600 Physcomitrium patens HOM05D001434 ORTHO05D004586 1.5e-15 85.9 64 59.4
Lsat_1_v5_gn_5_2920 Lactuca sativa HOM05D001434 ORTHO05D004586 2.5e-15 85.1 62 64.5
Oeu034037.1 Olea europaea HOM05D001434 ORTHO05D004586 2.5e-15 85.1 73 58.9
C03p16670 Brassica napus HOM05D001434 ORTHO05D004586 3.2e-15 84.7 75 61.3
BolC3t14087H Brassica oleracea HOM05D001434 ORTHO05D004586 3.2e-15 84.7 75 61.3
BraA03t10726Z Brassica rapa HOM05D001434 ORTHO05D004586 3.2e-15 84.7 75 61.3
Mapoly0021s0054 Marchantia polymorpha HOM05D001434 ORTHO05D004586 5.5e-15 84.0 59 66.1
Pp3c20_12230 Physcomitrium patens HOM05D001434 ORTHO05D004586 5.5e-15 84.0 59 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3056 Anthoceros agrestis HOM05D001434 ORTHO05D004586 7.2e-15 83.6 63 63.5
ECA236G1274 Erigeron canadensis HOM05D001434 ORTHO05D004586 7.2e-15 83.6 70 57.1
ECA246G3933 Erigeron canadensis HOM05D001434 ORTHO05D004586 1.2e-14 82.8 80 55.0
SEGI_27580 Sequoiadendron giganteum HOM05D001434 ORTHO05D004586 4.7e-14 80.9 62 62.9
Os07g0511000 Oryza sativa ssp. japonica HOM05D001434 ORTHO05D004586 4.0e-13 77.8 59 62.7
Aqoxy435s001 Aquilegia oxysepala HOM05D001434 ORTHO05D004586 1.5e-12 75.9 74 55.4
BcaC01g06341 Brassica carinata HOM05D001434 ORTHO05D004586 7.5e-12 73.6 52 71.2
SMO358G0516 Selaginella moellendorffii HOM05D001434 ORTHO05D004586 2.2e-11 72.0 68 52.9
Medtr5g093270 Medicago truncatula HOM05D001434 ORTHO05D004586 3.7e-11 71.2 46 76.1
Atru.chr2.3467 Acer truncatum HOM05D001434 ORTHO05D004586 3.1e-10 68.2 45 73.3
CBR_g52387 Chara braunii HOM05D001434 ORTHO05D004586 2.7e-09 65.1 47 70.2


User provided reference genes

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