Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 2.0e-32 141.7 66 100.0
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 9.4e-27 122.9 65 87.7
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.2e-26 122.5 65 87.7
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 8.0e-26 119.8 65 84.6
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.0e-25 119.4 65 84.6
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 1.0e-25 119.4 65 84.6
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 1.0e-25 119.4 65 84.6
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 1.4e-25 119.0 65 83.1
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 3.0e-25 117.9 65 84.6
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 3.0e-25 117.9 65 81.5
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 4.0e-25 117.5 65 81.5
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 5.2e-25 117.1 65 80.0
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 5.2e-25 117.1 65 83.1
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 5.2e-25 117.1 65 81.5
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 5.2e-25 117.1 65 81.5
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 5.2e-25 117.1 65 83.1
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 6.8e-25 116.7 65 80.0
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 6.8e-25 116.7 65 80.0
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 8.8e-25 116.3 64 82.8
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 8.8e-25 116.3 64 82.8
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 8.8e-25 116.3 64 82.8
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 8.8e-25 116.3 65 83.1
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.2e-24 115.9 65 81.5
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.2e-24 115.9 65 81.5
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.2e-24 115.9 65 81.5
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.2e-24 115.9 65 81.5
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.2e-24 115.9 65 81.5
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.2e-24 115.9 65 80.0
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 1.5e-24 115.5 65 80.0
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.5e-24 115.5 65 80.0
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.5e-24 115.5 65 80.0
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.5e-24 115.5 65 80.0
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 2.0e-24 115.2 65 83.1
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 2.6e-24 114.8 65 80.0
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 2.6e-24 114.8 65 80.0
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 2.6e-24 114.8 65 81.5
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 2.6e-24 114.8 65 81.5
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 3.4e-24 114.4 65 80.0
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 3.4e-24 114.4 65 80.0
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 3.4e-24 114.4 65 80.0
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.4e-24 114.4 65 80.0
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 5.7e-24 113.6 65 80.0
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 5.7e-24 113.6 65 80.0
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 5.7e-24 113.6 65 80.0
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 5.7e-24 113.6 65 78.5
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 7.5e-24 113.2 65 80.0
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 9.8e-24 112.8 65 78.5
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 9.8e-24 112.8 65 78.5
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 9.8e-24 112.8 65 78.5
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 9.8e-24 112.8 65 80.0
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 1.3e-23 112.5 65 76.9
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.3e-23 112.5 65 80.0
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 1.3e-23 112.5 65 81.5
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.3e-23 112.5 64 79.7
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.7e-23 112.1 65 78.5
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 1.7e-23 112.1 65 78.5
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 2.2e-23 111.7 65 78.5
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.2e-23 111.7 65 78.5
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 2.2e-23 111.7 65 76.9
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.2e-23 111.7 65 78.5
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 2.8e-23 111.3 65 76.9
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.8e-23 111.3 65 76.9
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.8e-23 111.3 65 78.5
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 2.8e-23 111.3 64 79.7
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 3.7e-23 110.9 65 76.9
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 3.7e-23 110.9 65 76.9
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 3.7e-23 110.9 65 78.5
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.7e-23 110.9 65 76.9
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 3.7e-23 110.9 65 80.0
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 3.7e-23 110.9 65 76.9
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.8e-23 110.5 65 75.4
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 4.8e-23 110.5 64 79.7
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 4.8e-23 110.5 65 78.5
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 78.5
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 78.5
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 78.5
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 76.9
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 76.9
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 76.9
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 78.5
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 75.4
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 6.3e-23 110.2 54 96.3
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 6.3e-23 110.2 65 75.4
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 8.3e-23 109.8 65 76.9
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 8.3e-23 109.8 65 76.9
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 8.3e-23 109.8 65 75.4
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 8.3e-23 109.8 65 75.4
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 8.3e-23 109.8 65 75.4
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.1e-22 109.4 65 76.9
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.1e-22 109.4 65 76.9
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 1.1e-22 109.4 65 76.9
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.4e-22 109.0 65 78.5
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.4e-22 109.0 65 78.5
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 1.4e-22 109.0 65 73.8
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.4e-22 109.0 65 75.4
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.8e-22 108.6 65 73.8
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.8e-22 108.6 65 75.4
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.8e-22 108.6 65 73.8
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.1e-22 107.8 64 75.0
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 3.1e-22 107.8 65 75.4
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 3.1e-22 107.8 64 75.0
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.1e-22 107.8 65 76.9
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 3.1e-22 107.8 65 75.4
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 4.1e-22 107.5 79 68.4
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 4.1e-22 107.5 65 75.4
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 4.1e-22 107.5 65 76.9
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 5.4e-22 107.1 66 69.7
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 7.0e-22 106.7 69 73.9
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 7.0e-22 106.7 65 75.4
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.2e-21 105.9 65 72.3
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 1.2e-21 105.9 65 72.3
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 1.6e-21 105.5 65 70.8
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.0e-21 105.1 65 76.9
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.0e-21 105.1 65 73.8
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 2.7e-21 104.8 65 70.8
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.5e-21 104.4 65 73.8
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 3.5e-21 104.4 65 70.8
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 4.5e-21 104.0 65 72.3
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 5.9e-21 103.6 65 70.8
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.9e-21 103.6 65 73.8
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 7.7e-21 103.2 65 70.8
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 7.7e-21 103.2 65 75.4
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.3e-20 102.4 65 72.3
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 2.3e-20 101.7 65 70.8
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 3.8e-20 100.9 59 78.0
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 5.0e-20 100.5 53 84.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 5.0e-20 100.5 65 69.2
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 1.9e-19 98.6 65 67.7
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.5e-19 98.2 65 66.2
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.6e-18 95.5 65 64.6
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 6.1e-18 93.6 65 70.8
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 6.1e-18 93.6 65 64.6
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.4e-17 92.4 65 60.0
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 8.9e-17 89.7 66 59.1
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 8.9e-17 89.7 65 58.5
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.2e-16 89.4 64 59.4
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.7e-15 85.5 62 58.1
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 2.2e-15 85.1 63 57.1
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.5e-13 77.8 66 48.5
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 5.2e-09 63.9 33 84.8
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.9e-07 58.2 32 81.2
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 1.4e-06 55.8 31 80.6
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 3.2e-06 54.7 33 75.8


User provided reference genes

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