Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27663 Trifolium pratense HOM05D000454 ORTHO05D002637 5.0e-32 142.1 71 100.0
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 4.4e-28 129.0 71 87.3
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 2.4e-26 123.2 71 83.1
Lj3g0015079 Lotus japonicus HOM05D000454 ORTHO05D002637 3.9e-21 105.9 71 70.4
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 5.7e-20 102.1 71 69.0
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 9.7e-20 101.3 71 66.2
arahy.Tifrunner.gnm1.ann1.A9YK01 Arachis hypogaea HOM05D000454 ORTHO05D002637 9.7e-20 101.3 71 66.2
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 9.7e-20 101.3 71 66.2
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 2.2e-19 100.1 71 67.6
arahy.Tifrunner.gnm1.ann1.N3KGB9 Arachis hypogaea HOM05D000454 ORTHO05D002637 3.7e-19 99.4 71 64.8
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 6.3e-19 98.6 70 68.6
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.1e-18 97.8 71 64.8
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 3.1e-18 96.3 71 63.4
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 3.1e-18 96.3 71 63.4
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 9.1e-18 94.7 71 63.4
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 9.1e-18 94.7 71 63.4
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 1.7e-16 90.5 71 59.2
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 1.5e-15 87.4 71 56.3
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 1.9e-15 87.0 69 60.9
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 1.2e-14 84.3 70 55.7
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.2e-14 84.3 71 59.2
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 1.2e-14 84.3 71 54.9
FvH4_6g32091 Fragaria vesca HOM05D000454 ORTHO05D002637 1.6e-14 84.0 71 60.6
FAN14G5147 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.6e-14 84.0 71 60.6
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 1.6e-14 84.0 71 53.5
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 2.1e-14 83.6 71 54.9
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 2.7e-14 83.2 71 57.7
Prupe.3G062400 Prunus persica HOM05D000454 ORTHO05D002637 4.7e-14 82.4 71 54.9
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 8.0e-14 81.6 68 54.4
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 8.0e-14 81.6 70 54.3
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 1.0e-13 81.3 70 55.7
Dinv30455 Davidia involucrata HOM05D000454 ORTHO05D002637 1.8e-13 80.5 70 51.4
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 1.8e-13 80.5 70 51.4
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 4.0e-13 79.3 71 53.5
QL05p020750 Quercus lobata HOM05D000454 ORTHO05D002637 6.7e-13 78.6 70 54.3
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 3.3e-12 76.3 71 52.1
Sed0021062 Sechium edule HOM05D000454 ORTHO05D002637 3.3e-12 76.3 71 52.1
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 4.4e-12 75.9 71 52.1
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 5.7e-12 75.5 71 52.1
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 5.7e-12 75.5 71 52.1
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 7.5e-12 75.1 71 50.7
MELO3C024269.2 Cucumis melo HOM05D000454 ORTHO05D002637 9.7e-12 74.7 72 56.9
Atru.chr1.3491 Acer truncatum HOM05D000454 ORTHO05D002637 1.3e-11 74.3 71 49.3
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 1.3e-11 74.3 71 52.1
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 3.7e-11 72.8 71 47.9
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 3.7e-11 72.8 71 50.7
CsaV3_7G033580 Cucumis sativus L. HOM05D000454 ORTHO05D002637 1.1e-10 71.2 72 54.2
Thecc.06G097000 Theobroma cacao HOM05D000454 ORTHO05D002637 1.1e-10 71.2 70 47.1
Thecc.06G096900 Theobroma cacao HOM05D000454 ORTHO05D002637 1.8e-10 70.5 71 46.5
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 2.4e-10 70.1 71 43.7
ClCG09G001750 Citrullus lanatus HOM05D000454 ORTHO05D002637 3.1e-10 69.7 51 58.8
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 3.1e-10 69.7 71 46.5
Duzib168G0801 Durio zibethinus HOM05D000454 ORTHO05D002637 7.0e-10 68.6 71 46.5
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 7.0e-10 68.6 67 46.3
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 7.0e-10 68.6 71 46.5
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 7.0e-10 68.6 71 45.1
PGR102G3036 Punica granatum HOM05D000454 ORTHO05D002637 7.0e-10 68.6 71 49.3
GSVIVG01035638001 Vitis vinifera HOM05D000454 ORTHO05D002637 7.0e-10 68.6 71 45.1
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 1.6e-09 67.4 71 46.5
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 2.7e-09 66.6 71 43.7
Dinv14254 Davidia involucrata HOM05D000454 ORTHO05D002637 5.9e-09 65.5 71 40.8
ECA248G1005 Erigeron canadensis HOM05D000454 ORTHO05D002637 5.9e-09 65.5 70 44.3
TAR636G2176 Trochodendron aralioides HOM05D000454 ORTHO05D002637 5.9e-09 65.5 71 45.1
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 7.7e-09 65.1 71 43.7
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 7.7e-09 65.1 53 56.6
PGSC0003DMG400004315 Solanum tuberosum HOM05D000454 ORTHO05D002637 7.7e-09 65.1 71 40.8
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 7.7e-09 65.1 71 42.3
TAR626G1687 Trochodendron aralioides HOM05D000454 ORTHO05D002637 7.7e-09 65.1 71 45.1
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.0e-08 64.7 71 39.4
Atru.chr1.3486 Acer truncatum HOM05D000454 ORTHO05D002637 1.3e-08 64.3 51 58.8
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.3e-08 64.3 71 40.8
Ciclev10007796m.g Citrus clementina HOM05D000454 ORTHO05D002637 1.3e-08 64.3 71 40.8
Atru.chr7.2112 Acer truncatum HOM05D000454 ORTHO05D002637 1.7e-08 63.9 71 40.8
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 2.9e-08 63.2 67 46.3
Solyc08g066760.4 Solanum lycopersicum HOM05D000454 ORTHO05D002637 2.9e-08 63.2 72 43.1
Ciclev10007811m.g Citrus clementina HOM05D000454 ORTHO05D002637 3.8e-08 62.8 71 39.4
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 3.8e-08 62.8 67 41.8
Thecc.09G043600 Theobroma cacao HOM05D000454 ORTHO05D002637 3.8e-08 62.8 71 39.4
Nitab4.5_0000151g0410 Nicotiana tabacum HOM05D000454 ORTHO05D002637 5.0e-08 62.4 71 40.8
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 6.5e-08 62.0 68 42.6
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 6.5e-08 62.0 71 47.9
HanXRQChr09g0275901 Helianthus annuus HOM05D000454 ORTHO05D002637 8.5e-08 61.6 71 46.5
Nitab4.5_0000837g0120 Nicotiana tabacum HOM05D000454 ORTHO05D002637 1.1e-07 61.2 71 39.4
Atru.chr7.2100 Acer truncatum HOM05D000454 ORTHO05D002637 1.5e-07 60.8 71 40.8
Atru.chr7.2114 Acer truncatum HOM05D000454 ORTHO05D002637 1.5e-07 60.8 71 40.8
Solyc08g066770.3 Solanum lycopersicum HOM05D000454 ORTHO05D002637 1.5e-07 60.8 70 42.9
Sopen08g020730 Solanum pennellii HOM05D000454 ORTHO05D002637 1.5e-07 60.8 72 41.7
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 1.9e-07 60.5 71 39.4
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 2.5e-07 60.1 71 39.4
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 3.2e-07 59.7 61 42.6
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 4.2e-07 59.3 71 39.4
Cpa.g.sc7.265 Carica papaya HOM05D000454 ORTHO05D002637 5.5e-07 58.9 71 43.7
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 5.5e-07 58.9 72 41.7
Sopen08g020740 Solanum pennellii HOM05D000454 ORTHO05D002637 5.5e-07 58.9 72 40.3
DCAR_007717 Daucus carota HOM05D000454 ORTHO05D002637 7.2e-07 58.5 70 37.1
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 7.2e-07 58.5 71 39.4
PGSC0003DMG400012067 Solanum tuberosum HOM05D000454 ORTHO05D002637 1.2e-06 57.8 70 40.0
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 1.6e-06 57.4 70 38.6
RcHm_v2.0_Chr2g0139951 Rosa chinensis HOM05D000454 ORTHO05D002637 1.6e-06 57.4 65 40.0
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 2.1e-06 57.0 68 41.2
Duzib192G1039 Durio zibethinus HOM05D000454 ORTHO05D002637 2.1e-06 57.0 69 43.5
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 2.1e-06 57.0 64 46.9
Lsat_1_v5_gn_4_99840 Lactuca sativa HOM05D000454 ORTHO05D002637 2.1e-06 57.0 71 43.7
Sc12g0009600 Simmondsia chinensis HOM05D000454 ORTHO05D002637 2.1e-06 57.0 56 41.1
HanXRQChr09g0275911 Helianthus annuus HOM05D000454 ORTHO05D002637 2.7e-06 56.6 71 43.7
Sed0002239 Sechium edule HOM05D000454 ORTHO05D002637 2.7e-06 56.6 60 41.7
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.6e-06 56.2 67 37.3
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 4.7e-06 55.8 71 40.8
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 4.7e-06 55.8 61 41.0
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 6.1e-06 55.5 61 39.3
PGSC0003DMG400004319 Solanum tuberosum HOM05D000454 ORTHO05D002637 6.1e-06 55.5 70 38.6
GSVIVG01035671001 Vitis vinifera HOM05D000454 ORTHO05D002637 6.1e-06 55.5 71 36.6
COL.COLO4_18654 Corchorus olitorius HOM05D000454 ORTHO05D002637 8.0e-06 55.1 73 35.6


User provided reference genes

Program Settings