Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27606 Trifolium pratense HOM05D000084 ORTHO05D036495 3.9e-69 264.6 129 100.0
Medtr6g080470 Medicago truncatula HOM05D000084 ORTHO05D004328 3.4e-57 224.9 131 85.5
Psat1g031400 Pisum sativum HOM05D000084 ORTHO05D004328 1.0e-56 223.4 132 83.3
Ca_25306_v3 Cicer arietinum L. HOM05D000084 ORTHO05D004328 3.9e-53 211.5 131 80.2
Lalb_Chr24g0398001 Lupinus albus HOM05D000084 ORTHO05D004328 5.7e-52 207.6 130 80.0
Lj2g0012258 Lotus japonicus HOM05D000084 ORTHO05D004328 2.8e-51 205.3 131 80.2
Lj1g0000744 Lotus japonicus HOM05D000084 ORTHO05D004328 2.4e-50 202.2 131 77.9
Lalb_Chr22g0353311 Lupinus albus HOM05D000084 ORTHO05D004328 2.4e-50 202.2 129 79.1
VMungo0251G1657 Vigna mungo HOM05D000084 ORTHO05D004328 7.7e-49 197.2 130 75.4
arahy.Tifrunner.gnm1.ann1.PC8ILL Arachis hypogaea HOM05D000084 ORTHO05D004328 2.2e-48 195.7 129 76.7
arahy.Tifrunner.gnm1.ann1.QB4P8A Arachis hypogaea HOM05D000084 ORTHO05D004328 2.2e-48 195.7 129 76.7
Glyma.05G243000 Glycine max HOM05D000084 ORTHO05D004328 2.9e-48 195.3 131 74.0
Lalb_Chr14g0370801 Lupinus albus HOM05D000084 ORTHO05D004328 8.5e-48 193.7 131 75.6
Phvul.004G152000 Phaseolus vulgaris HOM05D000084 ORTHO05D004328 1.6e-46 189.5 129 76.0
VMungo0464G0358 Vigna mungo HOM05D000084 ORTHO05D004328 2.7e-46 188.7 129 76.0
Glyma.07G100200 Glycine max HOM05D000084 ORTHO05D004328 3.6e-46 188.3 129 75.2
Glyma.09G178500 Glycine max HOM05D000084 ORTHO05D004328 4.7e-46 188.0 129 75.2
MD14G1232000 Malus domestica HOM05D000084 ORTHO05D004328 2.0e-44 182.6 130 71.5
Prupe.5G227900 Prunus persica HOM05D000084 ORTHO05D004328 2.6e-44 182.2 133 69.2
Eucgr.K02247 Eucalyptus grandis HOM05D000084 ORTHO05D004328 4.4e-44 181.4 133 69.9
Thecc.03G046800 Theobroma cacao HOM05D000084 ORTHO05D004328 1.3e-43 179.9 130 73.1
FAN04G2301 Fragaria x ananassa HOM05D000084 ORTHO05D004328 1.7e-43 179.5 133 66.9
RcHm_v2.0_Chr7g0179111 Rosa chinensis HOM05D000084 ORTHO05D004328 2.2e-43 179.1 133 66.9
TPR.G22790 Trifolium pratense HOM05D000084 ORTHO05D004328 2.8e-43 178.7 130 71.5
FvH4_5g16910 Fragaria vesca HOM05D000084 ORTHO05D004328 6.3e-43 177.6 133 66.9
FAN18G1645 Fragaria x ananassa HOM05D000084 ORTHO05D004328 6.3e-43 177.6 133 66.9
Medtr3g054080 Medicago truncatula HOM05D000084 ORTHO05D004328 6.3e-43 177.6 131 71.8
FAN08G0286 Fragaria x ananassa HOM05D000084 ORTHO05D004328 1.1e-42 176.8 132 67.4
Gohir.A09G174500 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.1e-42 176.8 130 71.5
Haze_06092 Corylus avellana HOM05D000084 ORTHO05D004328 1.8e-42 176.0 130 66.9
TWI60G0025 Tripterygium wilfordii HOM05D000084 ORTHO05D004328 3.1e-42 175.3 133 68.4
Sed0022626 Sechium edule HOM05D000084 ORTHO05D004328 4.1e-42 174.9 133 66.9
TWI15G1070 Tripterygium wilfordii HOM05D000084 ORTHO05D004328 4.1e-42 174.9 133 67.7
MD06G1222900 Malus domestica HOM05D000084 ORTHO05D004328 7.0e-42 174.1 130 70.0
Gohir.D09G052200 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.2e-41 173.3 130 69.2
Gohir.D09G171600 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.2e-41 173.3 130 70.8
Gorai.006G193300 Gossypium raimondii HOM05D000084 ORTHO05D004328 1.2e-41 173.3 130 70.8
Manes.06G009200 Manihot esculenta HOM05D000084 ORTHO05D004328 1.2e-41 173.3 133 67.7
Gohir.A09G051100 Gossypium hirsutum HOM05D000084 ORTHO05D004328 5.9e-41 171.0 130 69.2
Cfa000697 Carpinus fangiana HOM05D000084 ORTHO05D004328 1.0e-40 170.2 130 65.4
Gorai.006G057400 Gossypium raimondii HOM05D000084 ORTHO05D004328 1.0e-40 170.2 130 68.5
CiPaw.09G075800 Carya illinoinensis HOM05D000084 ORTHO05D004328 1.3e-40 169.9 130 68.5
ClCG06G014500 Citrullus lanatus HOM05D000084 ORTHO05D004328 1.7e-40 169.5 133 65.4
Dinv13553 Davidia involucrata HOM05D000084 ORTHO05D004328 1.7e-40 169.5 133 67.7
CsaV3_1G004160 Cucumis sativus L. HOM05D000084 ORTHO05D004328 3.8e-40 168.3 135 64.4
Solyc08g081280.3 Solanum lycopersicum HOM05D000084 ORTHO05D004328 5.0e-40 167.9 133 66.9
Sopen08g029590 Solanum pennellii HOM05D000084 ORTHO05D004328 5.0e-40 167.9 133 66.9
Potri.014G079100 Populus trichocarpa HOM05D000084 ORTHO05D004328 1.1e-39 166.8 133 66.9
PGR044G2468 Punica granatum HOM05D000084 ORTHO05D004328 1.5e-39 166.4 133 66.9
MELO3C017342.2 Cucumis melo HOM05D000084 ORTHO05D004328 2.5e-39 165.6 135 63.0
Potri.012G052100 Populus trichocarpa HOM05D000084 ORTHO05D004328 2.5e-39 165.6 133 65.4
PGSC0003DMG400012334 Solanum tuberosum HOM05D000084 ORTHO05D004328 2.5e-39 165.6 133 66.2
MSTRG.9283 Avicennia marina HOM05D000084 ORTHO05D004328 3.2e-39 165.2 133 66.9
Sed0001871 Sechium edule HOM05D000084 ORTHO05D004328 3.2e-39 165.2 133 66.2
CAN.G532.3 Capsicum annuum HOM05D000084 ORTHO05D004328 4.2e-39 164.9 133 66.2
Sabra14G0057300 Salix brachista HOM05D000084 ORTHO05D004328 4.2e-39 164.9 133 66.2
Hma1.2p1_2154F.1_g315320 Hydrangea macrophylla HOM05D000084 ORTHO05D004328 9.4e-39 163.7 133 65.4
Atru.chr9.941 Acer truncatum HOM05D000084 ORTHO05D004328 1.2e-38 163.3 130 66.2
TPR.G6102 Trifolium pratense HOM05D000084 ORTHO05D004328 2.1e-38 162.5 130 68.5
GSVIVG01008372001 Vitis vinifera HOM05D000084 ORTHO05D004328 2.1e-38 162.5 133 64.7
Actinidia17118 Actinidia chinensis HOM05D000084 ORTHO05D004328 3.6e-38 161.8 133 63.9
Sabra12G0035800 Salix brachista HOM05D000084 ORTHO05D004328 6.1e-38 161.0 145 62.1
arahy.Tifrunner.gnm1.ann1.IV9MYI Arachis hypogaea HOM05D000084 ORTHO05D004328 1.8e-37 159.5 115 72.2
Migut.I00408 Erythranthe guttata HOM05D000084 ORTHO05D004328 2.3e-37 159.1 133 65.4
CiPaw.10G063700 Carya illinoinensis HOM05D000084 ORTHO05D004328 6.8e-37 157.5 114 68.4
TAR629G0907 Trochodendron aralioides HOM05D000084 ORTHO05D004328 6.8e-37 157.5 133 62.4
Atru.chr5.2904 Acer truncatum HOM05D000084 ORTHO05D004328 1.5e-36 156.4 133 63.9
Aqoxy1G01318 Aquilegia oxysepala HOM05D000084 ORTHO05D004328 1.5e-36 156.4 132 62.9
Cc04_g06700 Coffea canephora HOM05D000084 ORTHO05D004328 2.6e-36 155.6 133 62.4
arahy.Tifrunner.gnm1.ann1.S5Z9V6 Arachis hypogaea HOM05D000084 ORTHO05D004328 7.5e-36 154.1 115 69.6
COL.COLO4_35353 Corchorus olitorius HOM05D000084 ORTHO05D004328 1.7e-35 152.9 131 67.2
FAN13G2150 Fragaria x ananassa HOM05D000084 ORTHO05D004328 2.2e-35 152.5 117 65.8
CSS0036007 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D004328 4.1e-34 148.3 133 61.7
CSS0043950 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D004328 4.1e-34 148.3 133 61.7
Duzib068G1312 Durio zibethinus HOM05D000084 ORTHO05D004328 4.1e-34 148.3 120 65.8
Cpa.g.sc3.443 Carica papaya HOM05D000084 ORTHO05D004328 9.1e-34 147.1 129 64.3
Lj5A154T73 Lonicera japonica HOM05D000084 ORTHO05D036495 1.6e-33 146.4 133 62.4
Hund02338 Selenicereus undatus HOM05D000084 ORTHO05D004328 4.5e-33 144.8 133 59.4
EL10Ac5g11508 Beta vulgaris HOM05D000084 ORTHO05D004328 2.9e-32 142.1 133 57.1
Ciclev10008533m.g Citrus clementina HOM05D000084 ORTHO05D004328 1.5e-31 139.8 114 61.4
HanXRQChr15g0464491 Helianthus annuus HOM05D000084 ORTHO05D004328 2.5e-31 139.0 129 62.0
MBI17_g13559_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D004328 4.2e-31 138.3 134 58.2
THA.LOC104813910 Tarenaya hassleriana HOM05D000084 ORTHO05D004328 5.5e-31 137.9 129 61.2
SGA_v2.0_scaffold25G10973 Striga asiatica HOM05D000084 ORTHO05D004328 7.2e-31 137.5 133 58.6
SGA_v2.0_scaffold19G08797 Striga asiatica HOM05D000084 ORTHO05D004328 1.2e-30 136.7 133 58.6
PSO478G5246 Papaver somniferum HOM05D000084 ORTHO05D004328 3.6e-30 135.2 127 53.5
Oeu061231.1 Olea europaea HOM05D000084 ORTHO05D004328 1.4e-29 133.3 124 59.7
Peaxi162Scf00074g02034 Petunia axillaris HOM05D000084 ORTHO05D004328 1.8e-29 132.9 117 60.7
PSO017G4401 Papaver somniferum HOM05D000084 ORTHO05D004328 3.0e-29 132.1 127 52.8
vmacro23486 Vaccinium macrocarpon HOM05D000084 ORTHO05D004328 8.8e-29 130.6 117 60.7
Aa31LG4G4020 Aethionema arabicum HOM05D000084 ORTHO05D004328 1.5e-28 129.8 129 58.9
SalBow5G4682 Salvia bowleyana HOM05D000084 ORTHO05D004328 5.7e-28 127.9 117 59.8
Rhsim08G0129200 Rhododendron simsii HOM05D000084 ORTHO05D004328 2.2e-27 125.9 117 58.1
AL2G33490 Arabidopsis lyrata HOM05D000084 ORTHO05D004328 2.8e-27 125.6 128 55.5
AT1G73690 Arabidopsis thaliana HOM05D000084 ORTHO05D004328 3.7e-27 125.2 128 56.2
HanXRQChr10g0286451 Helianthus annuus HOM05D000084 ORTHO05D004328 4.9e-27 124.8 129 56.6
Ah.02g115600 Amaranthus hybridus HOM05D000084 ORTHO05D004328 8.3e-27 124.0 133 54.9
AT1G18040 Arabidopsis thaliana HOM05D000084 ORTHO05D004328 1.1e-26 123.6 129 55.0
DCAR_011379 Daucus carota HOM05D000084 ORTHO05D004328 1.1e-26 123.6 114 59.6
Carub.0001s1772 Capsella rubella HOM05D000084 ORTHO05D004328 1.8e-26 122.9 129 55.8
TPR.G39961 Trifolium pratense HOM05D000084 ORTHO05D036495 1.8e-26 122.9 58 100.0
CARHR018630 Cardamine hirsuta HOM05D000084 ORTHO05D004328 2.4e-26 122.5 129 55.0
Nn4g24029 Nelumbo nucifera HOM05D000084 ORTHO05D004328 3.1e-26 122.1 129 51.9
AL1G30390 Arabidopsis lyrata HOM05D000084 ORTHO05D004328 5.4e-26 121.3 129 53.5
Carub.0002s2044 Capsella rubella HOM05D000084 ORTHO05D004328 9.2e-26 120.6 129 55.0
A08p30590 Brassica napus HOM05D000084 ORTHO05D004328 1.2e-25 120.2 131 54.2
BraA08t34990Z Brassica rapa HOM05D000084 ORTHO05D004328 1.6e-25 119.8 131 54.2
Sp5g28870 Schrenkiella parvula HOM05D000084 ORTHO05D004328 2.0e-25 119.4 128 54.7
Aa31LG1G25570 Aethionema arabicum HOM05D000084 ORTHO05D004328 7.8e-25 117.5 127 54.3
Oeu031798.1 Olea europaea HOM05D000084 ORTHO05D004328 1.0e-24 117.1 117 56.4
Thhalv10018665m.g Eutrema salsugineum HOM05D000084 ORTHO05D004328 1.3e-24 116.7 127 54.3
ATR0706G221 Amborella trichopoda HOM05D000084 ORTHO05D004328 2.3e-24 115.9 135 51.1
A09p60120 Brassica napus HOM05D000084 ORTHO05D004328 2.9e-24 115.5 129 53.5
C08p18320 Brassica napus HOM05D000084 ORTHO05D004328 2.9e-24 115.5 131 52.7
BolC8t49466H Brassica oleracea HOM05D000084 ORTHO05D004328 2.9e-24 115.5 131 52.7
C08p43560 Brassica napus HOM05D000084 ORTHO05D004328 3.8e-24 115.2 129 53.5
BolC8t51902H Brassica oleracea HOM05D000084 ORTHO05D004328 3.8e-24 115.2 129 53.5
AUR62029943 Chenopodium quinoa HOM05D000084 ORTHO05D004328 3.8e-24 115.2 117 53.8
Sp1g16070 Schrenkiella parvula HOM05D000084 ORTHO05D004328 6.6e-24 114.4 131 52.7
BraA09t41381Z Brassica rapa HOM05D000084 ORTHO05D004328 8.6e-24 114.0 129 52.7
BcaC07g41347 Brassica carinata HOM05D000084 ORTHO05D004328 1.5e-23 113.2 127 55.1
Thhalv10007847m.g Eutrema salsugineum HOM05D000084 ORTHO05D004328 3.3e-23 112.1 129 49.6
Glyma.08G050900 Glycine max HOM05D000084 ORTHO05D004328 7.3e-23 110.9 74 77.0
A07p39550 Brassica napus HOM05D000084 ORTHO05D004328 1.2e-22 110.2 129 52.7
BraA07t31504Z Brassica rapa HOM05D000084 ORTHO05D004328 1.6e-22 109.8 127 52.8
BcaC08g46788 Brassica carinata HOM05D000084 ORTHO05D004328 2.1e-22 109.4 129 51.9
C06p47790 Brassica napus HOM05D000084 ORTHO05D004328 2.1e-22 109.4 129 51.9
BolC6t39818H Brassica oleracea HOM05D000084 ORTHO05D004328 2.1e-22 109.4 129 51.9
CARHR066760 Cardamine hirsuta HOM05D000084 ORTHO05D004328 2.1e-22 109.4 127 51.2
Lsat_1_v5_gn_4_128021 Lactuca sativa HOM05D000084 ORTHO05D004328 4.7e-22 108.2 130 51.5
BcaB03g15074 Brassica carinata HOM05D000084 ORTHO05D004328 1.0e-21 107.1 127 51.2
Nitab4.5_0004114g0040 Nicotiana tabacum HOM05D000084 ORTHO05D004328 1.0e-21 107.1 143 47.6
HPP92_026638 Vanilla planifolia HOM05D000084 ORTHO05D004328 1.0e-21 107.1 138 50.7
Nitab4.5_0001522g0110 Nicotiana tabacum HOM05D000084 ORTHO05D004328 1.8e-21 106.3 149 46.3
Duzib205G0745 Durio zibethinus HOM05D000084 ORTHO05D004328 2.3e-21 105.9 114 53.5
Lsat_1_v5_gn_9_6940 Lactuca sativa HOM05D000084 ORTHO05D004328 6.8e-21 104.4 129 53.5
HPP92_015722 Vanilla planifolia HOM05D000084 ORTHO05D004328 4.4e-20 101.7 138 49.3
unitig_26.g9675 Utricularia gibba HOM05D000084 ORTHO05D004328 1.3e-19 100.1 116 50.0
vmacro17520 Vaccinium macrocarpon HOM05D000084 ORTHO05D004328 2.2e-19 99.4 117 51.3
CDE05G1124 Ceratophyllum demersum HOM05D000084 ORTHO05D004328 2.9e-19 99.0 131 48.1
CDE11G0389 Ceratophyllum demersum HOM05D000084 ORTHO05D004328 4.6e-17 91.7 138 45.7
Zm00001eb350890 Zea mays HOM05D000084 ORTHO05D004328 1.5e-15 86.7 117 47.9
Nn1g02213 Nelumbo nucifera HOM05D000084 ORTHO05D004328 6.2e-14 81.3 78 57.7
Mapoly0063s0076 Marchantia polymorpha HOM05D000084 ORTHO05D004328 2.3e-13 79.3 130 43.8
Zm00001eb287310 Zea mays HOM05D000084 ORTHO05D004328 5.2e-13 78.2 116 42.2
AagrBONN_evm.TU.Sc2ySwM_228.1705 Anthoceros agrestis HOM05D000084 ORTHO05D004328 5.8e-12 74.7 130 39.2
Cpa.g.sc170.18 Carica papaya HOM05D000084 ORTHO05D004328 4.9e-11 71.6 77 57.1
SHI19022 Sapria himalayana HOM05D000084 ORTHO05D004328 1.6e-09 66.6 113 40.7
Pp3c2_15020 Physcomitrium patens HOM05D000084 ORTHO05D004328 2.0e-09 66.2 127 40.2
ECA247G0024 Erigeron canadensis HOM05D000084 ORTHO05D004328 2.7e-09 65.9 57 61.4
Pp3c1_19220 Physcomitrium patens HOM05D000084 ORTHO05D004328 1.0e-08 63.9 127 38.6
THA.LOC104822578 Tarenaya hassleriana HOM05D000084 ORTHO05D004328 9.5e-07 57.4 61 55.7
GSVIVG01030954001 Vitis vinifera HOM05D000084 ORTHO05D004328 9.5e-07 57.4 63 55.6
AL2G24910 Arabidopsis lyrata HOM05D000084 ORTHO05D004328 1.2e-06 57.0 61 55.7
AT1G66750 Arabidopsis thaliana HOM05D000084 ORTHO05D004328 1.2e-06 57.0 61 55.7
CARHR058850 Cardamine hirsuta HOM05D000084 ORTHO05D004328 1.2e-06 57.0 61 55.7
Aa31LG2G3220 Aethionema arabicum HOM05D000084 ORTHO05D004328 2.1e-06 56.2 61 52.5
SMO143G0289 Selaginella moellendorffii HOM05D000084 ORTHO05D004328 2.1e-06 56.2 129 35.7
BcaB03g15235 Brassica carinata HOM05D000084 ORTHO05D004328 2.8e-06 55.8 70 54.3
Carub.0002s1297 Capsella rubella HOM05D000084 ORTHO05D004328 2.8e-06 55.8 61 55.7
CBR_g37868 Chara braunii HOM05D000084 ORTHO05D004328 2.8e-06 55.8 165 32.1
Thhalv10018801m.g Eutrema salsugineum HOM05D000084 ORTHO05D004328 2.8e-06 55.8 61 54.1
BcaC08g46139 Brassica carinata HOM05D000084 ORTHO05D004328 3.6e-06 55.5 62 54.8
A07p33580 Brassica napus HOM05D000084 ORTHO05D004328 3.6e-06 55.5 62 54.8
C06p40130 Brassica napus HOM05D000084 ORTHO05D004328 3.6e-06 55.5 62 54.8
BraA07t30985Z Brassica rapa HOM05D000084 ORTHO05D004328 3.6e-06 55.5 62 54.8
Sp5g21710 Schrenkiella parvula HOM05D000084 ORTHO05D004328 8.1e-06 54.3 61 54.1


User provided reference genes

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