Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 3.6e-20 100.5 48 100.0
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.9e-17 90.9 48 89.6
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.1e-16 89.0 48 87.5
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 5.5e-16 86.7 48 87.5
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 4.6e-15 83.6 47 78.7
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 6.0e-15 83.2 47 76.6
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 7.9e-15 82.8 47 76.6
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 7.9e-15 82.8 47 76.6
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 7.9e-15 82.8 47 76.6
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.0e-14 82.4 47 74.5
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-14 82.4 47 76.6
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 2.3e-14 81.3 47 76.6
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 2.3e-14 81.3 47 76.6
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 3.0e-14 80.9 47 74.5
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.9e-14 80.5 47 74.5
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 3.9e-14 80.5 45 77.8
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 6.7e-14 79.7 47 74.5
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.1e-13 79.0 47 76.6
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.1e-13 79.0 47 76.6
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.1e-13 79.0 47 72.3
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.5e-13 78.6 47 76.6
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 1.5e-13 78.6 47 80.9
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.9e-13 78.2 45 73.3
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.9e-13 78.2 46 76.1
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.9e-13 78.2 47 70.2
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 3.3e-13 77.4 47 68.1
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 3.3e-13 77.4 47 70.2
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 3.3e-13 77.4 47 74.5
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 3.3e-13 77.4 47 72.3
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.3e-13 77.4 47 70.2
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 3.3e-13 77.4 47 70.2
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 3.3e-13 77.4 47 70.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 4.3e-13 77.0 47 70.2
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 5.6e-13 76.6 46 71.7
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 5.6e-13 76.6 47 70.2
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 7.4e-13 76.3 47 70.2
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 7.4e-13 76.3 47 70.2
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.3e-12 75.5 47 68.1
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.3e-12 75.5 47 72.3
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 1.3e-12 75.5 47 68.1
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.3e-12 75.5 47 66.0
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.6e-12 75.1 47 66.0
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 2.8e-12 74.3 47 66.0
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 2.8e-12 74.3 47 63.8
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 2.8e-12 74.3 47 63.8
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 2.8e-12 74.3 47 63.8
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.8e-12 74.3 46 69.6
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.8e-12 74.3 46 69.6
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.8e-12 74.3 46 69.6
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.8e-12 74.3 47 63.8
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 2.8e-12 74.3 47 68.1
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.8e-12 74.3 47 66.0
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 3.7e-12 73.9 46 71.7
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 3.7e-12 73.9 47 68.1
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 3.7e-12 73.9 47 66.0
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 4.8e-12 73.6 47 66.0
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 4.8e-12 73.6 47 63.8
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 4.8e-12 73.6 47 66.0
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 63.8
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 63.8
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 66.0
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 63.8
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 63.8
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 66.0
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 66.0
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 68.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 6.2e-12 73.2 48 62.5
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 6.2e-12 73.2 48 62.5
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 6.2e-12 73.2 47 66.0
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.1e-12 72.8 47 66.0
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 8.1e-12 72.8 47 66.0
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.1e-11 72.4 47 63.8
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.1e-11 72.4 47 63.8
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.4e-11 72.0 47 63.8
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 1.8e-11 71.6 47 63.8
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.8e-11 71.6 47 66.0
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 1.8e-11 71.6 46 65.2
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 1.8e-11 71.6 46 65.2
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.8e-11 71.6 46 65.2
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 2.4e-11 71.2 47 61.7
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 2.4e-11 71.2 47 61.7
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.4e-11 71.2 46 65.2
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 3.1e-11 70.9 47 61.7
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.1e-11 70.9 47 61.7
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 3.1e-11 70.9 47 61.7
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 4.0e-11 70.5 47 63.8
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 6.9e-11 69.7 46 63.0
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 6.9e-11 69.7 46 65.2
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 6.9e-11 69.7 46 60.9
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 9.0e-11 69.3 47 61.7
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 9.0e-11 69.3 47 63.8
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.2e-10 68.9 47 59.6
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 1.5e-10 68.6 47 63.8
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 2.0e-10 68.2 47 55.3
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 2.6e-10 67.8 47 61.7
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.6e-10 67.8 47 59.6
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 2.6e-10 67.8 47 59.6
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 3.4e-10 67.4 47 57.4
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 3.4e-10 67.4 47 57.4
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 3.4e-10 67.4 47 61.7
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 3.4e-10 67.4 47 57.4
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 7.6e-10 66.2 47 57.4
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.0e-09 65.9 46 60.9
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.0e-09 65.9 54 59.3
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 1.3e-09 65.5 47 61.7
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.2e-09 64.7 47 53.2
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 2.2e-09 64.7 47 53.2
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 3.8e-09 63.9 47 57.4
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 6.5e-09 63.2 47 55.3
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 8.4e-09 62.8 47 48.9
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 1.9e-08 61.6 48 47.9
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 2.5e-08 61.2 47 51.1
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 2.5e-08 61.2 47 51.1
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.2e-08 60.5 48 47.9
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 7.1e-08 59.7 47 48.9
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 7.1e-08 59.7 47 48.9
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 7.1e-08 59.7 47 48.9
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 1.0e-06 55.8 46 50.0
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 5.1e-06 53.5 28 75.0


User provided reference genes

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