Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27494 Trifolium pratense HOM05D000007 ORTHO05D000017 4.1e-66 254.6 130 100.0
TPR.G30455 Trifolium pratense HOM05D000007 ORTHO05D000017 3.5e-41 171.8 106 85.8
TPR.G14544 Trifolium pratense HOM05D000007 ORTHO05D000017 3.3e-39 165.2 88 95.5
Psat1g175680 Pisum sativum HOM05D000007 ORTHO05D000017 6.0e-33 144.4 106 76.4
Ca_00728_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 1.7e-32 142.9 110 75.5
Medtr2g026010 Medicago truncatula HOM05D000007 ORTHO05D000017 2.0e-28 129.4 106 67.0
Medtr2g028110 Medicago truncatula HOM05D000007 ORTHO05D000017 4.3e-23 111.7 90 66.7
Medtr2g022170 Medicago truncatula HOM05D000007 ORTHO05D000017 1.6e-22 109.8 102 60.8
Medtr1g068835 Medicago truncatula HOM05D000007 ORTHO05D000017 6.2e-22 107.8 100 65.0
Medtr1g068905 Medicago truncatula HOM05D000007 ORTHO05D000017 8.1e-22 107.5 100 63.0
Lj6g0017026 Lotus japonicus HOM05D000007 ORTHO05D000017 1.4e-21 106.7 107 60.7
Medtr1g068875 Medicago truncatula HOM05D000007 ORTHO05D000017 4.0e-21 105.1 92 67.4
Medtr8g099460 Medicago truncatula HOM05D000007 ORTHO05D000017 5.2e-21 104.8 120 56.7
Medtr2g031640 Medicago truncatula HOM05D000007 ORTHO05D000017 3.4e-20 102.1 103 58.3
Medtr2g021050 Medicago truncatula HOM05D000007 ORTHO05D000017 7.6e-20 100.9 80 71.2
MD05G1358500 Malus domestica HOM05D000007 ORTHO05D000017 1.7e-19 99.8 108 56.5
Glyma.09G010600 Glycine max HOM05D000007 ORTHO05D000017 2.9e-19 99.0 106 55.7
Glyma.15G115100 Glycine max HOM05D000007 ORTHO05D000017 4.9e-19 98.2 106 57.5
MD10G1332600 Malus domestica HOM05D000007 ORTHO05D000017 8.4e-19 97.4 108 54.6
Medtr2g425980 Medicago truncatula HOM05D000007 ORTHO05D000017 8.4e-19 97.4 90 60.0
Cfa000091 Carpinus fangiana HOM05D000007 ORTHO05D000017 2.4e-18 95.9 108 52.8
Medtr2g031680 Medicago truncatula HOM05D000007 ORTHO05D000017 2.4e-18 95.9 96 57.3
Medtr2g028130 Medicago truncatula HOM05D000007 ORTHO05D000017 5.4e-18 94.7 81 65.4
Haze_06950 Corylus avellana HOM05D000007 ORTHO05D000017 9.2e-18 94.0 108 51.9
arahy.Tifrunner.gnm1.ann1.DDZ1HR Arachis hypogaea HOM05D000007 ORTHO05D000017 1.6e-17 93.2 105 51.4
arahy.Tifrunner.gnm1.ann1.F3ZHRM Arachis hypogaea HOM05D000007 ORTHO05D000017 1.6e-17 93.2 105 51.4
Medtr4g006270 Medicago truncatula HOM05D000007 ORTHO05D000017 2.7e-17 92.4 106 51.9
Medtr2g426090 Medicago truncatula HOM05D000007 ORTHO05D000017 6.0e-17 91.3 76 67.1
Prupe.4G009600 Prunus persica HOM05D000007 ORTHO05D000017 6.0e-17 91.3 108 52.8
VMungo1215G0255 Vigna mungo HOM05D000007 ORTHO05D000017 6.0e-17 91.3 106 49.1
Medtr2g024110 Medicago truncatula HOM05D000007 ORTHO05D000017 7.8e-17 90.9 81 64.2
Medtr7g110360 Medicago truncatula HOM05D000007 ORTHO05D000017 7.8e-17 90.9 103 57.3
Medtr0667s0010 Medicago truncatula HOM05D000007 ORTHO05D000017 1.0e-16 90.5 89 61.8
FAN21G2540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.3e-16 89.4 108 51.9
Medtr2g031720 Medicago truncatula HOM05D000007 ORTHO05D000017 2.3e-16 89.4 105 51.4
RcHm_v2.0_Chr5g0001381 Rosa chinensis HOM05D000007 ORTHO05D000017 2.3e-16 89.4 108 51.9
FvH4_3g00900 Fragaria vesca HOM05D000007 ORTHO05D000017 3.9e-16 88.6 108 51.9
FAN25G3412 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.9e-16 88.6 108 51.9
CiPaw.09G103200 Carya illinoinensis HOM05D000007 ORTHO05D000017 5.1e-16 88.2 108 51.9
Medtr2g426060 Medicago truncatula HOM05D000007 ORTHO05D000017 5.1e-16 88.2 79 65.8
Haze_06942 Corylus avellana HOM05D000007 ORTHO05D000017 6.6e-16 87.8 108 47.2
Ca_21036_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 1.1e-15 87.0 106 49.1
Glyma.17G008200 Glycine max HOM05D000007 ORTHO05D000017 1.1e-15 87.0 108 50.0
Phvul.003G084100 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 1.5e-15 86.7 106 48.1
Glyma.07G265800 Glycine max HOM05D000007 ORTHO05D000017 2.5e-15 85.9 107 49.5
Lj4g0008928 Lotus japonicus HOM05D000007 ORTHO05D000017 2.5e-15 85.9 105 51.4
VMungo1127G0265 Vigna mungo HOM05D000007 ORTHO05D000017 2.5e-15 85.9 106 46.2
Medtr3g083010 Medicago truncatula HOM05D000007 ORTHO05D000017 3.3e-15 85.5 83 60.2
VMungo1080G0340 Vigna mungo HOM05D000007 ORTHO05D000017 2.8e-14 82.4 106 45.3
Medtr4g133170 Medicago truncatula HOM05D000007 ORTHO05D000017 4.8e-14 81.6 106 47.2
Psat4g004720 Pisum sativum HOM05D000007 ORTHO05D000017 6.2e-14 81.3 106 46.2
Eucgr.E03976 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.1e-13 80.5 109 45.9
Medtr2g028140 Medicago truncatula HOM05D000007 ORTHO05D000017 1.4e-13 80.1 98 55.1
QL05p069347 Quercus lobata HOM05D000007 ORTHO05D000017 1.4e-13 80.1 108 45.4
ClCG01G010140 Citrullus lanatus HOM05D000007 ORTHO05D000017 1.8e-13 79.7 108 42.6
CiPaw.10G078600 Carya illinoinensis HOM05D000007 ORTHO05D000017 3.1e-13 79.0 108 46.3
MELO3C021691.2 Cucumis melo HOM05D000007 ORTHO05D000017 4.0e-13 78.6 108 42.6
Lalb_Chr20g0119291 Lupinus albus HOM05D000007 ORTHO05D000017 4.0e-13 78.6 118 45.8
CANSAT56G1762 Cannabis sativa HOM05D000007 ORTHO05D000017 5.3e-13 78.2 108 46.3
Medtr2g025420 Medicago truncatula HOM05D000007 ORTHO05D000017 6.9e-13 77.8 81 58.0
Medtr4g070550 Medicago truncatula HOM05D000007 ORTHO05D000017 9.0e-13 77.4 99 52.5
CsaV3_1G017240 Cucumis sativus L. HOM05D000007 ORTHO05D000017 1.2e-12 77.0 108 41.7
Medtr2g426070 Medicago truncatula HOM05D000007 ORTHO05D000017 2.0e-12 76.3 90 53.3
Medtr2g024100 Medicago truncatula HOM05D000007 ORTHO05D000017 3.4e-12 75.5 74 64.9
Medtr2g426020 Medicago truncatula HOM05D000007 ORTHO05D000017 3.4e-12 75.5 81 55.6
CSS0049080 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 9.9e-12 73.9 111 46.8
Duzib160G0463 Durio zibethinus HOM05D000007 ORTHO05D000017 1.3e-11 73.6 108 42.6
Medtr2g028160 Medicago truncatula HOM05D000007 ORTHO05D000017 1.7e-11 73.2 84 51.2
Medtr2g031700 Medicago truncatula HOM05D000007 ORTHO05D000017 2.2e-11 72.8 96 49.0
Medtr1g068860 Medicago truncatula HOM05D000007 ORTHO05D000017 4.9e-11 71.6 99 47.5
Sed0024435 Sechium edule HOM05D000007 ORTHO05D000017 6.4e-11 71.2 108 41.7
Dinv30807 Davidia involucrata HOM05D000007 ORTHO05D000017 1.1e-10 70.5 109 43.1
EL10As6g23636 Beta vulgaris HOM05D000007 ORTHO05D000017 1.4e-10 70.1 82 50.0
Potri.006G013000 Populus trichocarpa HOM05D000007 ORTHO05D000017 2.4e-10 69.3 114 40.4
AUR62012551 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.2e-10 68.9 108 42.6
COL.COLO4_31895 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.2e-10 68.9 108 44.4
Thecc.06G234200 Theobroma cacao HOM05D000007 ORTHO05D000017 5.4e-10 68.2 108 42.6
AUR62014647 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.6e-09 66.6 108 42.6
AUR62016933 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.6e-09 66.6 114 43.0
Gohir.D06G160200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.6e-09 66.6 107 43.0
Solyc01g008660.4 Solanum lycopersicum HOM05D000007 ORTHO05D000017 2.1e-09 66.2 90 46.7
Sopen01g004180 Solanum pennellii HOM05D000007 ORTHO05D000017 2.1e-09 66.2 90 46.7
COL.COLO4_06128 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.5e-09 65.5 78 53.8
vmacro00292 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 3.5e-09 65.5 115 41.7
vmacro00299 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 3.5e-09 65.5 115 41.7
Sabra16G0002800 Salix brachista HOM05D000007 ORTHO05D000017 4.6e-09 65.1 81 50.6
Sabra16G0015300 Salix brachista HOM05D000007 ORTHO05D000017 4.6e-09 65.1 81 50.6
Dinv11914 Davidia involucrata HOM05D000007 ORTHO05D000017 6.0e-09 64.7 108 42.6
Gorai.010G186900 Gossypium raimondii HOM05D000007 ORTHO05D000017 6.0e-09 64.7 107 42.1
Sc05g0008370 Simmondsia chinensis HOM05D000007 ORTHO05D000017 7.8e-09 64.3 85 50.6
Peaxi162Scf00597g00417 Petunia axillaris HOM05D000007 ORTHO05D000017 1.0e-08 63.9 91 48.4
Dinv43784 Davidia involucrata HOM05D001290 ORTHO05D001180 1.3e-08 63.5 108 43.5
Nitab4.5_0013904g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.3e-08 63.5 92 42.4
Peaxi162Scf00231g00224 Petunia axillaris HOM05D000007 ORTHO05D000017 1.3e-08 63.5 90 48.9
Rhsim13G0145100 Rhododendron simsii HOM05D000007 ORTHO05D000017 1.3e-08 63.5 101 43.6
Hma1.2p1_0127F.1_g059580 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 1.7e-08 63.2 109 42.2
PGSC0003DMG400017998 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.7e-08 63.2 90 45.6
Actinidia26854 Actinidia chinensis HOM05D000007 ORTHO05D000017 3.0e-08 62.4 85 47.1
Rhsim11G0019900 Rhododendron simsii HOM05D000007 ORTHO05D000017 3.0e-08 62.4 113 41.6
AUR62014755 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.9e-08 62.0 113 39.8
AUR62014756 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.9e-08 62.0 100 44.0
Peaxi162Scf00231g00013 Petunia axillaris HOM05D000007 ORTHO05D000017 3.9e-08 62.0 89 47.2
Peaxi162Scf00597g00511 Petunia axillaris HOM05D000007 ORTHO05D000017 3.9e-08 62.0 89 49.4
Ciclev10033971m.g Citrus clementina HOM05D000007 ORTHO05D000017 5.1e-08 61.6 133 36.1
Potri.006G013200 Populus trichocarpa HOM05D000007 ORTHO05D000017 5.1e-08 61.6 81 49.4
COL.COLO4_06115 Corchorus olitorius HOM05D000007 ORTHO05D000017 6.6e-08 61.2 82 50.0
Duzib192G0105 Durio zibethinus HOM05D000007 ORTHO05D000017 6.6e-08 61.2 108 41.7
Lj2P693T12 Lonicera japonica HOM05D000007 ORTHO05D000017 6.6e-08 61.2 110 39.1
VMungo0251G3437 Vigna mungo HOM05D000007 ORTHO05D000017 6.6e-08 61.2 94 40.4
Potri.010G154700 Populus trichocarpa HOM05D000007 ORTHO05D000017 1.1e-07 60.5 81 48.1
Potri.016G012500 Populus trichocarpa HOM05D000007 ORTHO05D000017 1.1e-07 60.5 81 48.1
CANSAT56G1116 Cannabis sativa HOM05D000007 ORTHO05D000017 1.5e-07 60.1 81 46.9
EL10As6g23638 Beta vulgaris HOM05D000007 ORTHO05D000017 1.9e-07 59.7 83 47.0
CSS0038812 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.9e-07 59.7 112 39.3
Lj2P928T12 Lonicera japonica HOM05D000007 ORTHO05D000017 1.9e-07 59.7 79 46.8
Lj2P943T5 Lonicera japonica HOM05D000007 ORTHO05D000017 1.9e-07 59.7 79 46.8
Medtr3g086970 Medicago truncatula HOM05D000007 ORTHO05D000017 1.9e-07 59.7 81 49.4
RhsimUnG0110700 Rhododendron simsii HOM05D000007 ORTHO05D000017 1.9e-07 59.7 76 55.3
CSS0050410 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 2.5e-07 59.3 112 39.3
AUR62012545 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.3e-07 58.9 81 40.7
Haze_06948 Corylus avellana HOM05D000007 ORTHO05D000017 3.3e-07 58.9 81 48.1
Medtr5g083940 Medicago truncatula HOM05D000007 ORTHO05D000017 3.3e-07 58.9 46 69.6
Peaxi162Scf00231g00028 Petunia axillaris HOM05D000007 ORTHO05D000017 3.3e-07 58.9 90 46.7
Thecc.06G108600 Theobroma cacao HOM05D000007 ORTHO05D000017 3.3e-07 58.9 93 41.9
Medtr2g025995 Medicago truncatula HOM05D027594 ORTHO05D000017 4.3e-07 58.5 77 49.4
Actinidia09174 Actinidia chinensis HOM05D000007 ORTHO05D000017 5.6e-07 58.2 112 39.3
CANSAT56G0960 Cannabis sativa HOM05D000007 ORTHO05D000017 5.6e-07 58.2 78 47.4
CAN.G1597.1 Capsicum annuum HOM05D000007 ORTHO05D000017 5.6e-07 58.2 92 44.6
CAN.G1597.2 Capsicum annuum HOM05D000007 ORTHO05D000017 5.6e-07 58.2 92 44.6
CAN.G4685.1 Capsicum annuum HOM05D000007 ORTHO05D000017 5.6e-07 58.2 92 44.6
Haze_06947 Corylus avellana HOM05D000007 ORTHO05D000017 5.6e-07 58.2 81 46.9
Peaxi162Scf00597g00053 Petunia axillaris HOM05D000007 ORTHO05D000017 5.6e-07 58.2 113 40.7
Oeu047068.1 Olea europaea HOM05D000007 ORTHO05D000017 7.3e-07 57.8 78 51.3
Peaxi162Scf00597g00412 Petunia axillaris HOM05D000007 ORTHO05D000017 7.3e-07 57.8 87 46.0
Sc05g0008330 Simmondsia chinensis HOM05D000007 ORTHO05D000017 7.3e-07 57.8 107 42.1
Lj2P689T8 Lonicera japonica HOM05D000007 ORTHO05D000017 9.6e-07 57.4 84 45.2
CANSAT56G0084 Cannabis sativa HOM05D000007 ORTHO05D000017 1.3e-06 57.0 83 47.0
SGA_v2.0_scaffold7G03755 Striga asiatica HOM05D000007 ORTHO05D000017 1.6e-06 56.6 69 52.2
CiPaw.09G103100 Carya illinoinensis HOM05D000007 ORTHO05D000017 2.1e-06 56.2 81 49.4
Ciclev10030112m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.1e-06 56.2 88 44.3
SGA_v2.0_scaffold549G52862 Striga asiatica HOM05D000007 ORTHO05D000017 2.1e-06 56.2 69 53.6
CSS0002420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 2.8e-06 55.8 108 38.9
Gohir.A06G153600 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.8e-06 55.8 83 43.4
Gohir.D06G160400 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.8e-06 55.8 83 43.4
Gorai.010G187100 Gossypium raimondii HOM05D000007 ORTHO05D000017 2.8e-06 55.8 83 43.4
Lj2P695T9 Lonicera japonica HOM05D000007 ORTHO05D000017 2.8e-06 55.8 83 42.2
SGA_v2.0_scaffold7G03764 Striga asiatica HOM05D000007 ORTHO05D000017 2.8e-06 55.8 69 50.7
CAN.G4837.1 Capsicum annuum HOM05D000007 ORTHO05D000017 3.6e-06 55.5 85 42.4
Ciclev10030174m.g Citrus clementina HOM05D000007 ORTHO05D000017 3.6e-06 55.5 88 45.5
COL.COLO4_21873 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.6e-06 55.5 80 47.5
Manes.01G095600 Manihot esculenta HOM05D000007 ORTHO05D000017 3.6e-06 55.5 81 48.1
Potri.006G011400 Populus trichocarpa HOM05D000007 ORTHO05D000521 4.8e-06 55.1 98 32.7
CAN.G64.26 Capsicum annuum HOM05D000007 ORTHO05D000017 6.2e-06 54.7 92 40.2
Ciclev10030329m.g Citrus clementina HOM05D000007 ORTHO05D000017 6.2e-06 54.7 105 41.0
COL.COLO4_22521 Corchorus olitorius HOM05D000007 ORTHO05D000017 6.2e-06 54.7 79 48.1
Duzib168G0318 Durio zibethinus HOM05D000007 ORTHO05D000017 6.2e-06 54.7 83 47.0
Hma1.2p1_0657F.1_g197080 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 6.2e-06 54.7 79 48.1
TAR626G0901 Trochodendron aralioides HOM05D000007 ORTHO05D000017 6.2e-06 54.7 109 34.9
Ciclev10011877m.g Citrus clementina HOM05D000007 ORTHO05D000017 8.1e-06 54.3 80 48.8


User provided reference genes

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