Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.6e-196 688.7 403 100.0
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 4.0e-128 462.2 398 75.4
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.9e-114 416.8 402 66.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.3e-113 414.1 383 66.8
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 5.1e-91 339.0 373 60.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 3.1e-88 329.7 407 60.0
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 6.5e-86 322.0 405 56.5
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 3.2e-85 319.7 408 55.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.2e-84 317.8 408 54.4
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 3.0e-83 313.2 404 52.5
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 6.3e-81 305.4 400 54.2
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 4.1e-80 302.8 411 53.8
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 2.0e-79 300.4 387 54.3
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.5e-79 299.3 403 53.3
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 5.9e-79 298.9 406 51.5
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 2.2e-78 297.0 404 50.2
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 8.5e-78 295.0 400 51.5
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 6.1e-76 288.9 396 50.8
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 5.7e-74 282.3 386 49.7
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.8e-73 280.0 391 50.1
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.3e-72 275.8 390 49.5
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 5.3e-72 275.8 400 49.2
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.5e-71 274.2 391 47.3
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.0e-71 273.9 370 50.3
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.5e-71 272.7 394 49.5
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.3e-70 271.2 373 49.6
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 5.0e-70 269.2 376 47.9
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 5.0e-70 269.2 352 51.4
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 5.0e-70 269.2 412 49.0
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 6.5e-70 268.9 394 49.7
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.1e-68 263.8 352 51.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 2.7e-68 263.5 392 48.5
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.7e-68 262.7 390 47.4
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.0e-67 261.5 404 45.8
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.0e-67 261.5 402 45.8
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.0e-67 261.5 385 47.0
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 2.3e-67 260.4 397 46.1
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.0e-67 260.0 391 47.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 3.0e-67 260.0 396 45.5
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.3e-65 254.6 407 45.9
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.7e-65 253.1 398 46.0
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 6.3e-65 252.3 413 44.6
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 8.2e-65 251.9 404 47.0
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.1e-64 249.6 399 45.6
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 7.0e-64 248.8 408 45.8
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 9.1e-64 248.4 264 59.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.6e-63 247.7 375 46.1
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 5.9e-63 245.7 393 47.1
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.0e-62 245.0 290 55.9
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 2.2e-62 243.8 408 45.8
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.9e-62 243.4 399 46.1
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.8e-62 243.0 408 45.3
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.8e-62 243.0 403 44.2
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.5e-62 242.3 396 47.2
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 3.2e-61 240.0 243 59.7
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.1e-60 237.3 380 46.6
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.7e-60 236.9 389 44.0
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 8.0e-60 235.3 278 55.8
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.0e-59 235.0 387 46.3
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 2.3e-59 233.8 403 46.4
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.0e-59 233.0 391 44.0
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.4e-58 229.6 256 54.3
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 9.7e-58 228.4 401 42.4
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 9.7e-58 228.4 249 56.6
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.7e-57 227.6 406 43.8
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.2e-57 227.3 412 44.2
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.8e-57 226.9 387 46.0
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.8e-57 226.1 397 43.1
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 6.3e-57 225.7 370 45.1
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.4e-56 223.8 401 41.4
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 2.0e-55 220.7 396 44.9
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 2.0e-55 220.7 397 41.6
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.0e-55 220.7 393 43.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 2.7e-55 220.3 245 54.3
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.5e-55 219.9 379 45.6
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 5.9e-55 219.2 342 46.5
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.7e-55 218.8 388 44.6
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 1.3e-54 218.0 398 45.0
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.3e-54 218.0 245 58.0
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.2e-54 217.2 250 54.0
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.9e-54 216.9 395 43.0
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.9e-54 216.9 383 43.3
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 5.0e-54 216.1 364 44.0
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.0e-54 216.1 245 55.1
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 6.5e-54 215.7 255 54.1
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.9e-53 214.2 404 42.3
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.5e-53 213.8 408 42.4
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 7.2e-53 212.2 383 41.5
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 7.2e-53 212.2 401 44.4
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.2e-53 212.2 386 42.7
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.2e-52 211.5 401 43.4
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.1e-52 209.1 377 44.0
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.4e-51 208.0 344 42.7
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 3.0e-51 206.8 362 45.9
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 3.0e-51 206.8 408 41.4
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-50 204.9 376 44.1
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 7.5e-50 202.2 389 44.2
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 7.5e-50 202.2 398 42.5
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 2.8e-49 200.3 393 41.2
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 8.3e-49 198.7 283 50.9
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 9.1e-48 195.3 269 51.3
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.6e-47 194.5 283 48.8
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.6e-47 194.5 367 43.9
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.0e-46 191.8 259 49.8
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.3e-46 190.7 362 43.1
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 5.0e-46 189.5 281 46.3
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 8.6e-46 188.7 242 50.0
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 3.3e-45 186.8 383 38.4
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 4.2e-45 186.4 266 46.6
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 9.8e-42 175.3 354 42.4
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 2.4e-40 170.6 255 45.9
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 4.5e-39 166.4 280 43.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 2.3e-38 164.1 282 45.0
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.3e-38 164.1 419 35.3
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 6.6e-38 162.5 417 35.0
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.6e-38 162.5 401 37.2
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.1e-37 161.8 237 47.3
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.5e-37 161.4 393 35.6
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.5e-37 161.4 239 49.0
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 5.6e-37 159.5 409 35.7
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 9.5e-37 158.7 402 33.8
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 1.2e-36 158.3 432 35.0
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.2e-36 158.3 418 34.9
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.2e-36 158.3 418 34.9
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.0e-35 153.7 229 47.6
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 4.0e-35 153.3 232 48.7
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.2e-34 151.8 255 46.3
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 1.2e-34 151.8 236 46.2
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.2e-34 151.8 354 36.2
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 3.4e-34 150.2 418 34.2
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.2e-33 147.5 261 43.7
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.0e-22 110.5 187 44.9
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 2.2e-17 94.4 440 28.4
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.5e-10 71.6 185 31.4
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 2.6e-10 70.9 93 39.8
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 5.8e-10 69.7 76 46.1
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.3e-09 68.6 113 38.9
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 2.2e-09 67.8 185 33.5
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 4.9e-09 66.6 196 29.6
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 4.9e-09 66.6 197 34.0
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.1e-08 65.5 191 28.8
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 1.9e-08 64.7 101 40.6
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 2.4e-08 64.3 74 50.0
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 3.2e-08 63.9 62 45.2
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 5.4e-08 63.2 142 35.2
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 5.4e-08 63.2 185 30.3
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 5.4e-08 63.2 140 34.3
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 5.4e-08 63.2 254 26.8
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 7.1e-08 62.8 101 35.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 1.2e-07 62.0 59 45.8
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 1.2e-07 62.0 82 39.0
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 2.1e-07 61.2 110 34.5
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.1e-07 61.2 173 32.4
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 2.1e-07 61.2 36 80.6
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 2.7e-07 60.8 208 27.4
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 3.5e-07 60.5 173 32.4
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.5e-07 60.5 168 32.7
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 4.6e-07 60.1 173 28.3
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 6.0e-07 59.7 239 26.4
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 7.8e-07 59.3 78 39.7
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 7.8e-07 59.3 78 39.7
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.0e-06 58.9 161 29.2
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.0e-06 58.9 78 39.7
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 1.0e-06 58.9 124 32.3
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.3e-06 58.5 197 30.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.7e-06 58.2 138 35.5
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 2.3e-06 57.8 161 29.2
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 3.9e-06 57.0 169 30.2
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 3.9e-06 57.0 114 32.5
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 5.1e-06 56.6 122 33.6


User provided reference genes

Program Settings