Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 2.3e-96 355.5 174 100.0
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 1.3e-70 270.0 158 84.8
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 6.3e-62 241.1 174 74.1
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 1.4e-53 213.4 174 67.8
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 5.0e-35 151.8 175 54.9
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 3.7e-30 135.6 174 50.6
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 6.3e-30 134.8 171 50.9
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 2.7e-28 129.4 94 72.3
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 4.2e-26 122.1 174 46.6
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 2.1e-25 119.8 178 49.4
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 2.1e-25 119.8 171 45.6
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.4e-24 117.1 178 51.1
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.4e-21 107.1 138 49.3
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 5.9e-20 101.7 175 41.1
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 2.3e-19 99.8 178 39.9
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 8.9e-16 87.8 174 38.5
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 8.9e-16 87.8 175 37.7
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 4.9e-14 82.0 172 36.0
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 4.9e-14 82.0 173 35.3
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 4.9e-14 82.0 178 37.1
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 2.4e-13 79.7 174 35.1
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 4.1e-13 79.0 175 34.9
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 4.1e-13 79.0 178 35.4
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 4.1e-13 79.0 176 37.5
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 4.1e-13 79.0 173 35.8
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 5.4e-13 78.6 178 37.6
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 5.4e-13 78.6 179 34.1
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 7.0e-13 78.2 183 34.4
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 9.2e-13 77.8 174 32.2
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 9.2e-13 77.8 172 33.1
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 1.2e-12 77.4 176 33.0
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 3.5e-12 75.9 189 33.3
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 3.5e-12 75.9 176 34.1
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 4.6e-12 75.5 173 32.9
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 4.6e-12 75.5 174 36.2
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 6.0e-12 75.1 68 55.9
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 6.0e-12 75.1 174 35.6
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 7.8e-12 74.7 179 33.0
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 7.8e-12 74.7 174 33.9
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 7.8e-12 74.7 180 35.0
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.0e-11 74.3 173 30.1
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 1.7e-11 73.6 175 33.7
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 1.7e-11 73.6 174 33.9
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 1.7e-11 73.6 174 33.9
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.3e-11 73.2 171 31.6
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 3.9e-11 72.4 67 58.2
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 3.9e-11 72.4 174 32.8
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 3.9e-11 72.4 182 33.0
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 5.0e-11 72.0 67 59.7
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 5.0e-11 72.0 67 59.7
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 5.0e-11 72.0 65 61.5
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 6.6e-11 71.6 171 31.6
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.6e-11 71.6 64 57.8
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.1e-10 70.9 67 58.2
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 1.1e-10 70.9 65 55.4
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.9e-10 70.1 65 55.4
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.5e-10 69.7 173 30.6
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 2.5e-10 69.7 74 52.7
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 4.3e-10 68.9 172 35.5
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 4.3e-10 68.9 127 37.0
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 5.6e-10 68.6 64 54.7
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 5.6e-10 68.6 172 34.9
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 7.3e-10 68.2 66 54.5
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 9.5e-10 67.8 174 32.8
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 1.2e-09 67.4 181 32.6
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.2e-09 67.4 67 46.3
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.6e-09 67.0 137 35.0
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 1.6e-09 67.0 66 51.5
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.1e-09 66.6 69 50.7
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 4.7e-09 65.5 64 51.6
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 4.7e-09 65.5 64 51.6
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 4.7e-09 65.5 64 51.6
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 4.7e-09 65.5 172 34.9
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 4.7e-09 65.5 79 51.9
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 1.1e-08 64.3 164 33.5
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 1.1e-08 64.3 72 45.8
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.1e-08 64.3 72 45.8
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.1e-08 64.3 64 53.1
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.4e-08 63.9 58 51.7
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.8e-08 63.5 64 50.0
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 3.1e-08 62.8 64 51.6
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 5.2e-08 62.0 66 48.5
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 8.9e-08 61.2 76 46.1
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 8.9e-08 61.2 50 62.0
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 2.0e-07 60.1 149 30.9
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 2.0e-07 60.1 69 43.5
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 3.4e-07 59.3 122 33.6
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 4.4e-07 58.9 86 41.9
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 5.8e-07 58.5 64 51.6
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 1.3e-06 57.4 64 48.4
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 1.7e-06 57.0 70 51.4
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 6.4e-06 55.1 37 59.5


User provided reference genes

Program Settings