Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.6e-45 185.7 90 100.0
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 3.2e-33 144.8 84 84.5
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 5.1e-31 137.5 84 81.0
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.1e-25 119.8 76 80.3
TPR.G28753 Trifolium pratense HOM05D000292 ORTHO05D000172 3.2e-25 118.2 64 93.8
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.2e-24 116.3 75 77.3
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 7.8e-24 113.6 87 70.1
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.0e-23 111.7 76 75.0
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 1.2e-19 99.8 91 58.2
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 2.2e-18 95.5 57 77.2
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 2.2e-18 95.5 57 77.2
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 2.2e-18 95.5 57 77.2
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 3.8e-18 94.7 66 71.2
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 8.4e-18 93.6 76 63.2
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 2.4e-17 92.0 77 61.0
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 1.2e-16 89.7 76 59.2
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.1e-16 89.0 74 64.9
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 2.1e-16 89.0 77 61.0
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.7e-16 88.6 58 75.9
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 7.8e-16 87.0 74 58.1
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 1.7e-15 85.9 82 56.1
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 2.3e-15 85.5 86 55.8
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 2.3e-15 85.5 70 60.0
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 2.3e-15 85.5 65 66.2
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 3.0e-15 85.1 75 62.7
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 6.6e-15 84.0 59 67.8
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 8.7e-15 83.6 74 55.4
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 8.7e-15 83.6 87 55.2
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.1e-14 83.2 74 54.1
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.1e-14 83.2 74 54.1
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.5e-14 82.8 83 54.2
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 3.3e-14 81.6 88 53.4
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 3.3e-14 81.6 89 53.9
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.3e-14 81.6 77 54.5
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 4.3e-14 81.3 79 54.4
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 4.3e-14 81.3 92 53.3
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 7.3e-14 80.5 76 52.6
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 7.3e-14 80.5 76 52.6
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 9.6e-14 80.1 55 70.9
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.2e-13 79.7 60 66.7
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.6e-13 79.3 77 58.4
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 2.1e-13 79.0 87 54.0
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 2.1e-13 79.0 71 64.8
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.8e-13 78.6 76 51.3
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 2.8e-13 78.6 42 85.7
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 6.2e-13 77.4 59 66.1
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 8.1e-13 77.0 74 58.1
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 8.1e-13 77.0 60 63.3
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 8.1e-13 77.0 74 58.1
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.1e-12 76.6 76 59.2
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.1e-12 76.6 41 85.4
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.4e-12 76.3 58 58.6
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 1.4e-12 76.3 60 68.3
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.8e-12 75.9 55 67.3
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.8e-12 75.9 55 67.3
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 1.8e-12 75.9 80 52.5
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 2.4e-12 75.5 54 64.8
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 4.0e-12 74.7 77 53.2
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 4.0e-12 74.7 72 52.8
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 6.9e-12 73.9 54 66.7
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.9e-12 73.9 54 66.7
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.9e-12 73.9 54 66.7
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.0e-11 72.4 74 48.6
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 2.6e-11 72.0 73 52.1
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 2.6e-11 72.0 59 61.0
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 3.4e-11 71.6 66 47.0
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 9.9e-11 70.1 74 45.9
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 9.9e-11 70.1 73 53.4
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.7e-10 69.3 70 51.4
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 2.9e-10 68.6 58 51.7
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 4.9e-10 67.8 58 53.4
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 4.9e-10 67.8 58 51.7
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 6.4e-10 67.4 59 55.9
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 6.4e-10 67.4 61 49.2
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 1.1e-09 66.6 52 59.6
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.1e-09 66.6 71 50.7
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.4e-09 66.2 59 52.5
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.4e-09 66.2 46 63.0
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.9e-09 65.9 58 51.7
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 2.4e-09 65.5 77 46.8
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 4.2e-09 64.7 72 50.0
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 4.2e-09 64.7 49 61.2
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 5.4e-09 64.3 46 63.0
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 7.1e-09 63.9 47 61.7
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 9.3e-09 63.5 59 59.3
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.2e-08 63.2 72 44.4
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.2e-08 63.2 71 54.9
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 2.1e-08 62.4 46 58.7
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 2.1e-08 62.4 46 58.7
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 2.1e-08 62.4 46 58.7
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 3.5e-08 61.6 66 45.5
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 3.5e-08 61.6 65 49.2
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 4.6e-08 61.2 52 59.6
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.0e-07 60.1 46 58.7
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.0e-07 60.1 53 56.6
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.7e-07 59.3 46 58.7
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 2.3e-07 58.9 49 57.1
DCAR_027337 Daucus carota HOM05D005475 ORTHO05D006575 3.0e-07 58.5 78 44.9
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 3.9e-07 58.2 68 47.1
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 3.9e-07 58.2 68 47.1
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 3.9e-07 58.2 68 47.1
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 5.1e-07 57.8 63 50.8
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.9e-06 55.8 41 63.4
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.9e-06 55.8 41 63.4
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 3.3e-06 55.1 52 50.0
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 4.3e-06 54.7 36 63.9
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 4.3e-06 54.7 67 41.8
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 4.3e-06 54.7 59 50.8
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 5.6e-06 54.3 42 59.5
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 5.6e-06 54.3 42 59.5
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 7.3e-06 53.9 66 42.4


User provided reference genes

Program Settings