Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.3e-71 273.1 149 100.0
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.6e-45 186.4 134 80.6
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 5.6e-35 151.4 134 71.6
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 7.3e-35 151.0 134 73.9
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.2e-34 150.2 134 71.6
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 4.7e-34 148.3 130 70.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.4e-33 146.0 130 67.7
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 5.2e-33 144.8 132 68.2
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.2e-32 143.7 130 67.7
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 4.4e-32 141.7 133 66.9
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 5.8e-32 141.4 132 64.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 5.8e-32 141.4 121 71.1
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 5.8e-32 141.4 132 65.2
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 9.9e-32 140.6 133 66.9
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.9e-31 139.0 130 66.2
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 4.9e-31 138.3 121 70.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.1e-30 137.1 130 64.6
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.4e-30 136.7 133 63.9
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.9e-30 136.3 138 60.9
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 7.1e-30 134.4 132 65.9
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 7.1e-30 134.4 133 65.4
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 7.1e-30 134.4 132 60.6
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.2e-29 133.7 134 60.4
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.2e-29 133.7 133 62.4
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 2.1e-29 132.9 132 65.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.1e-29 132.9 132 65.9
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 2.7e-29 132.5 132 64.4
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.5e-29 132.1 132 59.8
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 3.5e-29 132.1 132 59.8
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 4.6e-29 131.7 132 65.2
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.0e-28 130.6 134 67.2
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.0e-28 130.6 131 62.6
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.0e-28 130.6 134 59.0
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.3e-28 130.2 131 59.5
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.3e-28 130.2 132 60.6
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.7e-28 129.8 135 60.7
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.3e-28 129.4 131 64.9
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 3.0e-28 129.0 121 66.1
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.0e-28 129.0 132 64.4
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.9e-28 128.6 133 59.4
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.9e-28 128.6 130 61.5
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.6e-28 127.9 132 58.3
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 8.7e-28 127.5 133 60.9
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 8.7e-28 127.5 131 58.8
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.1e-27 127.1 132 62.1
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.5e-27 126.7 132 63.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.5e-27 126.7 135 62.2
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.9e-27 126.3 138 61.6
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 2.5e-27 125.9 121 64.5
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 4.3e-27 125.2 132 61.4
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 7.3e-27 124.4 133 58.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 9.6e-27 124.0 134 62.7
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 9.6e-27 124.0 134 60.4
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.6e-26 123.2 133 63.2
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 2.8e-26 122.5 135 61.5
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.8e-26 122.5 125 57.6
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.6e-26 122.1 126 62.7
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 3.6e-26 122.1 137 58.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 6.2e-26 121.3 134 61.9
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.1e-25 120.6 125 58.4
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.8e-25 119.8 130 58.5
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.4e-25 119.4 96 72.9
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 4.0e-25 118.6 154 53.2
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 4.0e-25 118.6 95 73.7
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.2e-25 118.2 134 61.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.2e-25 118.2 126 61.1
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 9.0e-25 117.5 134 59.0
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 9.0e-25 117.5 142 59.2
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.2e-24 117.1 152 53.3
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.2e-24 117.1 148 54.1
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.5e-24 116.7 144 53.5
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.5e-24 116.7 134 56.7
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.0e-24 116.3 139 54.7
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 4.4e-24 115.2 140 60.0
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.4e-24 115.2 138 60.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.8e-24 114.8 96 72.9
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 9.9e-24 114.0 94 74.5
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.3e-23 113.6 133 60.9
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.7e-23 113.2 143 58.7
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.7e-23 113.2 136 57.4
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.7e-23 113.2 149 51.0
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.2e-23 112.8 133 57.9
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.8e-23 112.1 130 53.8
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 4.9e-23 111.7 181 47.0
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-22 110.5 126 57.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.4e-22 110.2 132 62.1
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.9e-22 109.8 148 54.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.2e-22 109.0 143 57.3
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.6e-21 106.7 136 55.1
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.1e-21 106.3 142 55.6
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.6e-21 105.1 141 52.5
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.6e-21 105.1 134 53.7
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.0e-20 104.0 98 64.3
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.7e-20 103.2 113 55.8
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 1.7e-20 103.2 113 55.8
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.0e-20 102.4 134 51.5
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.9e-20 102.1 143 50.3
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.6e-20 101.3 132 52.3
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.6e-20 101.3 132 53.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.1e-19 100.5 132 52.3
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.9e-19 99.8 82 74.4
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.9e-19 99.8 144 52.1
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.3e-19 99.0 138 55.1
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 4.3e-19 98.6 152 48.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 4.3e-19 98.6 116 56.9
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.3e-18 97.1 141 50.4
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.3e-18 97.1 132 50.8
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 3.6e-18 95.5 144 50.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.1e-17 94.0 126 49.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.1e-17 94.0 126 49.2
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.1e-17 92.4 140 49.3
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 4.0e-17 92.0 137 51.1
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 4.0e-17 92.0 115 53.9
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.2e-16 90.5 140 49.3
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.4e-16 89.0 142 49.3
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.3e-15 87.0 137 48.2
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 1.3e-15 87.0 138 50.7
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.7e-15 86.7 142 51.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.7e-15 86.7 142 50.0
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.2e-15 86.3 149 46.3
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 4.9e-15 85.1 138 47.1
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 6.4e-15 84.7 109 52.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.1e-14 84.0 88 59.1
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.9e-14 83.2 131 48.1
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 2.4e-14 82.8 84 59.5
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 3.5e-13 79.0 141 45.4
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 4.6e-13 78.6 141 48.2
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 4.6e-13 78.6 141 48.2
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 7.9e-13 77.8 141 46.1
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 7.9e-13 77.8 141 46.1
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.7e-12 74.7 87 55.2
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 6.7e-12 74.7 96 55.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.7e-10 68.9 83 49.4
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 4.0e-09 65.5 99 46.5
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.2e-08 63.9 100 48.0
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.0e-08 63.2 98 45.9
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.6e-08 62.8 73 49.3
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 3.4e-08 62.4 147 42.9
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 5.8e-08 61.6 144 41.7
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-07 60.1 144 41.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.9e-07 59.3 135 40.7
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 8.4e-07 57.8 120 37.5
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.4e-06 57.0 139 36.7
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 4.2e-06 55.5 74 48.6
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.2e-06 55.5 50 72.0
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 4.2e-06 55.5 50 72.0
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 4.2e-06 55.5 148 40.5


User provided reference genes

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