Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2724 Trifolium pratense HOM05D006966 ORTHO05D008111 1.4e-118 429.9 260 100.0
Psat6g148600 Pisum sativum HOM05D006966 ORTHO05D008111 1.0e-44 184.5 297 47.5
Medtr1g082320 Medicago truncatula HOM05D006966 ORTHO05D008111 6.1e-37 158.7 188 66.0
Glyma.20G231100 Glycine max HOM05D006966 ORTHO05D008111 1.1e-30 137.9 195 44.1
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 2.6e-27 126.7 291 43.0
Glyma.10G157600 Glycine max HOM05D006966 ORTHO05D008111 2.2e-26 123.6 204 42.2
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 3.5e-24 116.3 289 37.7
Ca_10083_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.9e-22 110.5 178 48.9
VMungo0720G1138 Vigna mungo HOM05D006966 ORTHO05D008111 1.3e-18 97.8 110 42.7
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 2.2e-18 97.1 210 37.1
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 1.4e-17 94.4 196 39.8
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.6e-16 90.9 226 40.7
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.6e-16 89.4 126 46.0
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 7.8e-16 88.6 104 48.1
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 1.7e-15 87.4 126 45.2
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.7e-15 87.4 126 45.2
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.7e-15 87.4 126 45.2
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.7e-15 87.4 126 45.2
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 1.7e-15 87.4 196 36.2
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 1.7e-15 87.4 195 49.7
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 2.3e-15 87.0 115 44.3
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 3.0e-15 86.7 313 39.6
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.9e-15 86.3 126 45.2
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.9e-15 86.3 126 45.2
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 6.6e-15 85.5 119 41.2
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 8.6e-15 85.1 106 47.2
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.1e-14 84.7 115 43.5
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 1.5e-14 84.3 112 43.8
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 1.5e-14 84.3 122 42.6
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 2.5e-14 83.6 198 37.4
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 2.5e-14 83.6 109 41.3
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 4.3e-14 82.8 124 42.7
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 5.6e-14 82.4 114 41.2
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 9.5e-14 81.6 190 37.9
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 9.5e-14 81.6 116 39.7
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 1.6e-13 80.9 225 37.8
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 2.1e-13 80.5 105 41.9
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 2.1e-13 80.5 114 40.4
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 2.1e-13 80.5 213 34.7
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 2.1e-13 80.5 118 41.5
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 3.6e-13 79.7 108 41.7
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 4.7e-13 79.3 123 39.8
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 4.7e-13 79.3 147 36.1
QL03p004162 Quercus lobata HOM05D006966 ORTHO05D008111 4.7e-13 79.3 110 42.7
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 6.2e-13 79.0 119 38.7
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 6.2e-13 79.0 108 41.7
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 6.2e-13 79.0 104 43.3
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 8.0e-13 78.6 142 39.4
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 1.4e-12 77.8 121 39.7
Sc09g0003390 Simmondsia chinensis HOM05D006966 ORTHO05D008111 1.8e-12 77.4 113 41.6
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 2.3e-12 77.0 90 43.3
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 4.0e-12 76.3 117 39.3
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 4.0e-12 76.3 120 38.3
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 5.2e-12 75.9 107 43.9
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 5.2e-12 75.9 164 36.6
CDE11G0954 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 5.2e-12 75.9 110 40.9
Peaxi162Scf00071g00710 Petunia axillaris HOM05D006966 ORTHO05D008111 5.2e-12 75.9 57 63.2
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 5.2e-12 75.9 110 42.7
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 6.8e-12 75.5 106 44.3
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 6.8e-12 75.5 216 40.3
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 6.8e-12 75.5 138 36.2
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 6.8e-12 75.5 125 37.6
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 8.9e-12 75.1 126 37.3
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 1.2e-11 74.7 118 38.1
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 2.0e-11 73.9 75 45.3
Sed0007833 Sechium edule HOM05D006966 ORTHO05D008111 2.0e-11 73.9 103 42.7
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 2.6e-11 73.6 58 60.3
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 2.6e-11 73.6 58 60.3
Sc16g0008300 Simmondsia chinensis HOM05D006966 ORTHO05D008111 2.6e-11 73.6 104 41.3
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.4e-11 73.2 59 59.3
Thhalv10023602m.g Eutrema salsugineum HOM05D006966 ORTHO05D008111 4.4e-11 72.8 110 41.8
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 7.5e-11 72.0 129 38.0
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 7.5e-11 72.0 66 54.5
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 2.2e-10 70.5 115 38.3
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 3.7e-10 69.7 110 40.9
DCAR_022251 Daucus carota HOM05D006966 ORTHO05D008111 3.7e-10 69.7 107 37.4
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 4.9e-10 69.3 107 43.0
Nn4g26120 Nelumbo nucifera HOM05D006966 ORTHO05D008111 6.4e-10 68.9 104 40.4
DCAR_003308 Daucus carota HOM05D006966 ORTHO05D008111 8.3e-10 68.6 95 41.1
Aa31LG2G11900 Aethionema arabicum HOM05D006966 ORTHO05D008111 1.1e-09 68.2 108 41.7
TWI36G1607 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 1.1e-09 68.2 59 57.6
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 1.4e-09 67.8 111 38.7
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 1.4e-09 67.8 130 36.9
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 3.2e-09 66.6 65 50.8
Sabra13G0027800 Salix brachista HOM05D006966 ORTHO05D008111 3.2e-09 66.6 116 35.3
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 4.1e-09 66.2 141 32.6
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 4.1e-09 66.2 110 35.5
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 9.2e-09 65.1 129 37.2
Gorai.007G293600 Gossypium raimondii HOM05D006966 ORTHO05D008111 1.2e-08 64.7 192 41.7
Aqoxy5G00570 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 1.6e-08 64.3 142 33.1
EL10Ac4g09297 Beta vulgaris HOM05D036395 ORTHO05D008111 1.6e-08 64.3 118 35.6
TWI12G1291 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 1.6e-08 64.3 193 28.5
PSO832G1078 Papaver somniferum HOM05D006966 ORTHO05D008111 2.7e-08 63.5 126 37.3
COL.COLO4_13529 Corchorus olitorius HOM05D006966 ORTHO05D008111 6.0e-08 62.4 123 35.0
Gohir.A11G262300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 7.8e-08 62.0 142 49.3
PSO210G4305 Papaver somniferum HOM05D006966 ORTHO05D008111 7.8e-08 62.0 127 36.2
THA.LOC104823738 Tarenaya hassleriana HOM05D006966 ORTHO05D008111 7.8e-08 62.0 123 32.5
Gohir.D11G272300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.0e-07 61.6 142 52.8
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 1.7e-07 60.8 117 34.2
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 3.9e-07 59.7 101 36.6
Cfa006536 Carpinus fangiana HOM05D006966 ORTHO05D008111 5.0e-07 59.3 121 32.2
AUR62000853 Chenopodium quinoa HOM05D036395 ORTHO05D008111 6.6e-07 58.9 128 32.8
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 6.6e-07 58.9 96 37.5
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 8.6e-07 58.5 106 34.9
TAR362G0564 Trochodendron aralioides HOM05D006966 ORTHO05D008111 1.1e-06 58.2 113 35.4
Aqoxy2G03182 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 1.5e-06 57.8 111 39.6
SEGI_38791 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 1.5e-06 57.8 132 35.6
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 2.5e-06 57.0 121 32.2
Ah.04g159860 Amaranthus hybridus HOM05D006966 ORTHO05D008111 3.3e-06 56.6 106 34.9
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 3.3e-06 56.6 129 28.7
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 3.3e-06 56.6 117 29.9
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 3.3e-06 56.6 97 29.9
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 4.3e-06 56.2 108 32.4
CiPaw.08G167600 Carya illinoinensis HOM05D006966 ORTHO05D008111 4.3e-06 56.2 125 32.0
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 5.6e-06 55.8 113 32.7
CiPaw.07G014000 Carya illinoinensis HOM05D006966 ORTHO05D008111 7.3e-06 55.5 97 36.1
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 7.3e-06 55.5 126 27.8
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 9.5e-06 55.1 109 30.3
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 9.5e-06 55.1 117 31.6
Phvul.007G182901 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 9.5e-06 55.1 39 56.4


User provided reference genes

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