Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27193 Trifolium pratense HOM05D002745 ORTHO05D002945 3.7e-11 70.1 34 100.0
Medtr7g018880 Medicago truncatula HOM05D002745 ORTHO05D002945 1.4e-10 68.2 33 97.0
Psat3g191440 Pisum sativum HOM05D002745 ORTHO05D002945 7.1e-10 65.9 34 91.2
LjContig00222g0027382 Lotus japonicus HOM05D002745 ORTHO05D002945 1.2e-09 65.1 33 90.9
Lalb_Chr05g0211391 Lupinus albus HOM05D002745 ORTHO05D002945 1.3e-08 61.6 34 85.3
arahy.Tifrunner.gnm1.ann1.A85HWF Arachis hypogaea HOM05D002745 ORTHO05D002945 2.3e-08 60.8 33 81.8
arahy.Tifrunner.gnm1.ann1.4VP9UF Arachis hypogaea HOM05D002745 ORTHO05D002945 3.0e-08 60.5 33 81.8
CANSAT56G3529 Cannabis sativa HOM05D002745 ORTHO05D002945 6.6e-08 59.3 34 79.4
Glyma.11G014300 Glycine max HOM05D002745 ORTHO05D002945 6.6e-08 59.3 33 84.8
Potri.019G074800 Populus trichocarpa HOM05D002745 ORTHO05D002945 8.6e-08 58.9 34 76.5
Sabra19G0085500 Salix brachista HOM05D002745 ORTHO05D002945 8.6e-08 58.9 34 76.5
Phvul.002G035800 Phaseolus vulgaris HOM05D002745 ORTHO05D002945 1.1e-07 58.5 33 84.8
QL09p003658 Quercus lobata HOM05D002745 ORTHO05D002945 1.1e-07 58.5 32 78.1
Atru.chr13.2449 Acer truncatum HOM05D002745 ORTHO05D002945 1.5e-07 58.2 34 79.4
Duzib213G0118 Durio zibethinus HOM05D002745 ORTHO05D002945 1.5e-07 58.2 33 78.8
Duzib213G0784 Durio zibethinus HOM05D002745 ORTHO05D002945 1.5e-07 58.2 33 78.8
THA.LOC104810399 Tarenaya hassleriana HOM05D002745 ORTHO05D002945 1.5e-07 58.2 33 78.8
BraA07t31339Z Brassica rapa HOM05D002745 ORTHO05D002945 1.9e-07 57.8 33 78.8
Thhalv10019116m.g Eutrema salsugineum HOM05D002745 ORTHO05D002945 1.9e-07 57.8 33 78.8
Sp5g26630 Schrenkiella parvula HOM05D002745 ORTHO05D002945 1.9e-07 57.8 33 78.8
VMungo1215G1904 Vigna mungo HOM05D002745 ORTHO05D002945 1.9e-07 57.8 29 89.7
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 2.5e-07 57.4 31 80.6
CAN.G1039.10 Capsicum annuum HOM05D002745 ORTHO05D002945 2.5e-07 57.4 34 76.5
CDE05G0322 Ceratophyllum demersum HOM05D002745 ORTHO05D002945 2.5e-07 57.4 34 73.5
Glyma.01G231300 Glycine max HOM05D002745 ORTHO05D002945 2.5e-07 57.4 33 81.8
PGR042G2485 Punica granatum HOM05D002745 ORTHO05D002945 2.5e-07 57.4 34 76.5
vmacro17840 Vaccinium macrocarpon HOM05D002745 ORTHO05D002945 2.5e-07 57.4 34 76.5
COL.COLO4_09994 Corchorus olitorius HOM05D002745 ORTHO05D002945 3.3e-07 57.0 33 75.8
AT1G71480 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 5.6e-07 56.2 33 75.8
BcaC08g46583 Brassica carinata HOM05D002745 ORTHO05D002945 5.6e-07 56.2 33 75.8
C06p45630 Brassica napus HOM05D002745 ORTHO05D002945 5.6e-07 56.2 33 75.8
Carub.0002s1834 Capsella rubella HOM05D002745 ORTHO05D002945 5.6e-07 56.2 33 75.8
CARHR291200 Cardamine hirsuta HOM05D002745 ORTHO05D002945 5.6e-07 56.2 33 75.8
Cc10_g08820 Coffea canephora HOM05D002745 ORTHO05D002945 5.6e-07 56.2 34 70.6
Actinidia29392 Actinidia chinensis HOM05D002745 ORTHO05D002945 7.3e-07 55.8 33 72.7
BolC6t39614H Brassica oleracea HOM05D002745 ORTHO05D002945 7.3e-07 55.8 31 77.4
CiPaw.03G016400 Carya illinoinensis HOM05D002745 ORTHO05D002945 7.3e-07 55.8 34 70.6
PSO017G3694 Papaver somniferum HOM05D002745 ORTHO05D002945 7.3e-07 55.8 34 73.5
Solyc11g042620.3 Solanum lycopersicum HOM05D002745 ORTHO05D002945 7.3e-07 55.8 34 70.6
Sopen11g018770 Solanum pennellii HOM05D002745 ORTHO05D002945 7.3e-07 55.8 34 70.6
SGA_v2.0_scaffold118G32594 Striga asiatica HOM05D002745 ORTHO05D002945 7.3e-07 55.8 33 69.7
CSS0030148 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 9.5e-07 55.5 34 73.5
Manes.18G119000 Manihot esculenta HOM05D002745 ORTHO05D002945 9.5e-07 55.5 33 75.8
TAR628G0730 Trochodendron aralioides HOM05D002745 ORTHO05D002945 9.5e-07 55.5 34 70.6
Aa31LG4G9110 Aethionema arabicum HOM05D002745 ORTHO05D002945 1.2e-06 55.1 33 72.7
AUR62022409 Chenopodium quinoa HOM05D002745 ORTHO05D002945 1.2e-06 55.1 34 70.6
Ciclev10022055m.g Citrus clementina HOM05D002745 ORTHO05D002945 1.2e-06 55.1 33 75.8
Thecc.07G155300 Theobroma cacao HOM05D002745 ORTHO05D002945 1.2e-06 55.1 33 72.7
AL2G31140 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 1.6e-06 54.7 33 72.7
AUR62042167 Chenopodium quinoa HOM05D002745 ORTHO05D002945 2.1e-06 54.3 32 71.9
Gohir.A13G153132 Gossypium hirsutum HOM05D002745 ORTHO05D002945 2.1e-06 54.3 33 72.7
Gorai.013G178400 Gossypium raimondii HOM05D002745 ORTHO05D002945 2.1e-06 54.3 33 72.7
Prupe.1G545800 Prunus persica HOM05D002745 ORTHO05D002945 2.1e-06 54.3 34 70.6
Sed0018292 Sechium edule HOM05D002745 ORTHO05D002945 2.1e-06 54.3 34 67.6
ClCG09G019570 Citrullus lanatus HOM05D002745 ORTHO05D002945 2.8e-06 53.9 34 67.6
MELO3C021613.2 Cucumis melo HOM05D002745 ORTHO05D002945 2.8e-06 53.9 34 67.6
CsaV3_5G026810 Cucumis sativus L. HOM05D002745 ORTHO05D002945 2.8e-06 53.9 34 67.6
Migut.C01366 Erythranthe guttata HOM05D002745 ORTHO05D002945 3.6e-06 53.5 33 72.7
Peaxi162Scf00078g00352 Petunia axillaris HOM05D002745 ORTHO05D002945 3.6e-06 53.5 32 68.8
FvH4_5g33211 Fragaria vesca HOM05D002745 ORTHO05D002945 4.7e-06 53.1 34 67.6
RcHm_v2.0_Chr7g0231601 Rosa chinensis HOM05D002745 ORTHO05D002945 4.7e-06 53.1 34 67.6
BcaC08g45773 Brassica carinata HOM05D002745 ORTHO05D002945 6.2e-06 52.8 33 63.6
A07p30690 Brassica napus HOM05D002745 ORTHO05D002945 6.2e-06 52.8 33 63.6
C06p35560 Brassica napus HOM05D002745 ORTHO05D002945 6.2e-06 52.8 33 63.6
BolC6t38677H Brassica oleracea HOM05D002745 ORTHO05D002945 6.2e-06 52.8 33 63.6
BraA07t30707Z Brassica rapa HOM05D002745 ORTHO05D002945 6.2e-06 52.8 33 63.6
Nn5g27270 Nelumbo nucifera HOM05D002745 ORTHO05D002945 6.2e-06 52.8 33 66.7
Ah.11g043280 Amaranthus hybridus HOM05D002745 ORTHO05D002945 8.1e-06 52.4 34 67.6
EL10Ac1g01732 Beta vulgaris HOM05D002745 ORTHO05D002945 8.1e-06 52.4 31 71.0
Cpa.g.sc21.67 Carica papaya HOM05D002745 ORTHO05D002945 8.1e-06 52.4 33 66.7
HanXRQChr17g0559011 Helianthus annuus HOM05D002745 ORTHO05D002945 8.1e-06 52.4 33 69.7


User provided reference genes

Program Settings