Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 5.7e-98 360.9 183 100.0
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 7.0e-88 327.4 183 91.3
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.0e-86 323.6 182 90.1
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.3e-86 322.4 183 86.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.8e-84 315.5 184 86.4
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 6.0e-71 271.2 181 76.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 7.8e-71 270.8 181 76.2
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 2.3e-70 269.2 181 76.2
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 4.3e-69 265.0 181 75.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 7.3e-69 264.2 180 75.6
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 9.5e-69 263.8 181 74.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.1e-67 260.4 165 77.6
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.4e-67 260.0 155 80.6
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 3.1e-67 258.8 165 76.4
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 5.2e-67 258.1 155 80.0
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 6.8e-67 257.7 155 81.9
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.0e-66 256.1 160 78.8
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 3.4e-66 255.4 183 72.1
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.4e-66 255.0 152 80.9
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.8e-66 254.6 149 81.9
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.8e-66 254.6 149 81.9
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 7.5e-66 254.2 149 81.9
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 7.5e-66 254.2 156 78.2
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.7e-65 253.1 157 79.0
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 2.2e-65 252.7 149 81.2
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.2e-65 252.7 183 72.1
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 3.7e-65 251.9 181 71.3
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.7e-65 251.9 149 80.5
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.7e-65 251.9 157 78.3
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.7e-65 251.9 149 81.2
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 3.7e-65 251.9 162 76.5
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.7e-65 251.9 152 80.3
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.9e-65 251.5 152 79.6
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 6.4e-65 251.1 153 79.1
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 8.3e-65 250.8 157 78.3
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 8.3e-65 250.8 152 78.9
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.1e-64 250.4 170 73.5
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.1e-64 250.4 154 78.6
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.9e-64 249.6 157 77.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.9e-64 249.6 151 80.8
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-64 249.2 151 79.5
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-64 249.2 152 78.9
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.2e-64 248.8 153 77.1
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 5.4e-64 248.1 149 79.2
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.4e-64 248.1 152 80.3
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.0e-64 247.7 169 71.6
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.0e-64 247.7 157 77.7
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 7.0e-64 247.7 182 70.9
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 7.0e-64 247.7 152 78.3
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 7.0e-64 247.7 166 72.9
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 7.0e-64 247.7 149 79.9
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 7.0e-64 247.7 152 77.6
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.0e-64 247.7 157 77.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 9.2e-64 247.3 152 78.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 9.2e-64 247.3 152 78.3
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 9.2e-64 247.3 157 77.1
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 9.2e-64 247.3 154 76.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.2e-63 246.9 157 76.4
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.2e-63 246.9 161 76.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.2e-63 246.9 158 75.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.6e-63 246.5 152 77.0
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.0e-63 246.1 166 72.3
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-63 246.1 152 77.0
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.0e-63 246.1 179 69.8
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.0e-63 246.1 149 79.9
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.0e-63 246.1 180 71.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 3.5e-63 245.4 183 69.9
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.6e-63 245.0 179 69.8
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 4.6e-63 245.0 183 69.4
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 6.0e-63 244.6 152 77.0
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 6.0e-63 244.6 152 77.0
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.0e-63 244.6 148 79.7
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.0e-63 244.6 148 79.7
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 6.0e-63 244.6 182 69.8
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 7.8e-63 244.2 183 68.9
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.8e-63 244.2 158 74.7
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.0e-62 243.8 179 69.3
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.0e-62 243.8 157 74.5
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-62 243.4 166 74.1
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.3e-62 243.4 158 74.7
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-62 243.4 158 74.7
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-62 243.4 158 74.7
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-62 243.4 158 74.7
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-62 243.4 158 74.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.3e-62 243.4 173 69.9
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.3e-62 243.4 181 67.4
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.3e-62 243.4 173 71.1
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-62 243.0 172 69.2
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-62 243.0 181 66.9
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.7e-62 243.0 152 75.7
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-62 243.0 152 76.3
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.7e-62 243.0 169 71.0
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.3e-62 242.7 149 77.9
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.3e-62 242.7 178 69.1
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 3.0e-62 242.3 158 72.8
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.0e-62 242.3 176 69.3
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 5.0e-62 241.5 151 76.8
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 5.0e-62 241.5 149 78.5
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.0e-62 241.5 158 74.1
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.0e-62 241.5 158 74.1
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 5.0e-62 241.5 166 72.3
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 6.6e-62 241.1 159 74.2
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.6e-62 240.7 149 77.9
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.1e-61 240.4 163 73.6
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 3.3e-61 238.8 160 73.1
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 4.3e-61 238.4 177 69.5
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 4.3e-61 238.4 154 75.3
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 5.6e-61 238.0 156 71.8
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 5.6e-61 238.0 156 71.8
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 7.3e-61 237.7 163 73.6
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.2e-60 236.9 170 68.8
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.6e-60 236.5 152 74.3
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.6e-60 236.5 152 74.3
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 4.7e-60 235.0 173 66.5
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 4.7e-60 235.0 146 78.1
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 6.2e-60 234.6 181 67.4
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 8.1e-60 234.2 183 68.3
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.4e-59 233.4 183 68.9
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.8e-59 233.0 157 72.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.8e-59 233.0 151 76.8
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.8e-59 233.0 183 68.9
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 3.1e-59 232.3 152 75.0
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 3.1e-59 232.3 152 75.0
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 4.0e-59 231.9 149 76.5
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 6.8e-59 231.1 179 68.2
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 8.9e-59 230.7 180 65.6
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 8.9e-59 230.7 180 65.6
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.5e-58 229.9 183 67.8
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.0e-58 229.6 161 71.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 2.0e-58 229.6 149 73.8
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 2.6e-58 229.2 183 67.8
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.3e-57 226.9 183 66.7
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.9e-57 225.7 157 69.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.9e-57 225.7 140 73.6
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.9e-57 225.7 140 72.9
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 5.4e-56 221.5 231 52.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.3e-54 216.9 143 69.9
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.2e-50 203.8 132 73.5
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 8.4e-49 197.6 173 57.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 3.9e-46 188.7 152 61.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.3e-45 185.7 142 61.3
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.8e-44 182.6 128 69.5
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 6.2e-44 181.4 116 74.1
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 5.8e-42 174.9 134 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.2e-41 172.9 134 60.4
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 6.4e-41 171.4 130 66.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 3.2e-40 169.1 108 80.6
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 9.3e-40 167.5 133 57.1
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.0e-38 162.5 134 56.0
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.6e-37 157.5 155 55.5
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.8e-35 153.3 109 67.9
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.8e-35 153.3 91 78.0
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.1e-32 144.1 200 43.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 2.4e-32 142.9 120 55.8
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-31 140.2 88 79.5
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.1e-31 139.8 86 82.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.0e-30 136.0 152 52.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 5.1e-30 135.2 98 71.4
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.9e-25 118.6 103 59.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.4e-24 117.1 170 47.1
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.8e-20 102.8 71 71.8
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 6.9e-19 98.2 55 76.4
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-17 94.0 167 35.9
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.8e-17 92.4 157 42.7
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.9e-17 92.0 154 33.8
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 2.1e-15 86.7 111 39.6
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 2.1e-15 86.7 111 39.6
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.6e-15 85.5 140 35.7
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.6e-15 85.5 140 35.7
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.1e-14 82.0 50 68.0
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.5e-13 79.7 52 75.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 5.7e-13 78.6 95 40.0
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 4.1e-11 72.4 44 65.9
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 5.0e-09 65.5 95 37.9
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.5e-09 64.7 58 50.0
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 5.5e-08 62.0 56 50.0


User provided reference genes

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