Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 3.3e-98 361.7 179 100.0
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 9.6e-66 253.8 197 71.6
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 8.4e-62 240.7 176 76.1
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 3.1e-56 222.2 200 66.5
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 6.9e-56 221.1 274 48.5
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 2.9e-54 215.7 185 63.2
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 6.5e-54 214.5 197 65.0
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 6.7e-51 204.5 161 68.3
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 8.7e-51 204.1 203 65.0
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.5e-50 203.4 201 56.2
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.5e-50 203.4 201 56.2
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.5e-50 203.4 198 60.6
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 7.4e-50 201.1 200 59.5
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 9.0e-48 194.1 192 59.4
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.0e-46 190.7 197 57.9
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 6.5e-46 188.0 207 54.1
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.1e-45 187.2 204 53.4
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 3.2e-45 185.7 198 53.5
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 4.2e-45 185.3 205 54.1
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 7.9e-44 181.0 211 52.6
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.8e-43 179.9 204 54.9
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 2.3e-43 179.5 195 56.9
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 3.9e-43 178.7 201 52.2
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.1e-42 177.2 201 53.2
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.5e-42 176.8 215 49.8
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.7e-42 174.9 211 48.8
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.2e-41 172.9 213 49.3
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.2e-41 172.9 211 48.3
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 3.7e-41 172.2 215 49.8
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 8.2e-41 171.0 193 52.8
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.1e-40 170.6 219 47.0
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.1e-40 170.6 194 55.7
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 4.1e-40 168.7 212 49.1
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 6.9e-40 167.9 220 48.6
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.2e-39 167.2 218 49.1
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 3.4e-39 165.6 214 46.3
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.4e-39 165.6 219 47.0
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.5e-39 165.2 210 48.1
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.5e-39 165.2 191 52.9
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 5.9e-39 164.9 203 48.3
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 7.7e-39 164.5 217 50.7
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 7.7e-39 164.5 192 50.5
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 1.0e-38 164.1 230 45.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.2e-38 162.9 192 52.1
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 2.2e-38 162.9 218 48.6
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 6.5e-38 161.4 191 51.3
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 8.5e-38 161.0 218 50.0
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.4e-37 160.2 198 49.0
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 3.2e-37 159.1 209 48.3
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.5e-37 158.3 210 46.2
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 5.5e-37 158.3 205 48.8
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 9.4e-37 157.5 215 47.9
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.6e-36 156.8 213 46.0
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.6e-36 156.8 210 45.7
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.1e-36 156.4 188 49.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.7e-36 156.0 217 46.1
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.7e-36 155.2 205 47.3
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 7.9e-36 154.5 202 47.0
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.8e-35 153.3 206 49.5
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 3.9e-35 152.1 218 46.3
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 6.7e-35 151.4 215 46.0
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 8.8e-35 151.0 207 46.9
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 8.8e-35 151.0 193 49.2
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.1e-34 150.6 207 49.3
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.1e-34 150.6 221 46.6
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.5e-34 150.2 221 45.7
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.5e-34 150.2 208 47.6
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.0e-34 149.8 207 48.3
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 3.3e-34 149.1 208 47.1
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.3e-34 149.1 214 45.3
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 5.7e-34 148.3 202 46.0
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 9.7e-34 147.5 212 45.8
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 9.7e-34 147.5 221 45.7
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.7e-33 146.7 195 47.2
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.7e-33 146.7 219 47.5
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 2.2e-33 146.4 221 46.2
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 2.8e-33 146.0 205 46.8
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 2.8e-33 146.0 206 46.1
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 6.3e-33 144.8 208 46.2
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-32 144.1 207 43.5
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.1e-32 144.1 194 46.4
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.8e-32 143.3 181 49.7
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.4e-32 142.9 213 45.5
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.1e-32 142.1 207 48.3
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 7.0e-32 141.4 208 42.8
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.2e-31 140.6 214 46.3
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.2e-31 140.6 221 44.8
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.5e-31 140.2 223 45.3
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.5e-31 139.0 211 46.0
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.5e-31 139.0 206 41.7
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 3.5e-31 139.0 221 43.4
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 4.5e-31 138.7 200 45.0
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 4.5e-31 138.7 210 44.8
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.9e-31 138.3 207 43.0
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.0e-30 137.5 207 43.0
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.0e-30 137.5 222 42.3
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.7e-30 136.7 219 42.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.7e-30 136.7 214 43.5
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 2.2e-30 136.3 212 42.0
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.1e-29 134.0 217 45.6
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.2e-29 132.1 193 47.2
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 5.5e-29 131.7 171 47.4
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 7.2e-29 131.3 218 42.2
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-28 130.6 202 45.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.6e-28 129.0 166 47.6
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 8.0e-28 127.9 198 43.9
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.4e-27 127.1 188 46.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.4e-27 127.1 201 44.8
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 1.8e-27 126.7 193 39.9
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 3.0e-27 125.9 205 42.0
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 3.0e-27 125.9 222 41.9
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 3.9e-27 125.6 221 44.8
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 5.2e-27 125.2 193 39.9
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 2.0e-26 123.2 204 40.2
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 2.6e-26 122.9 193 43.0
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 3.3e-26 122.5 216 39.8
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 3.3e-26 122.5 239 38.9
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 4.4e-26 122.1 201 42.8
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 5.7e-26 121.7 193 40.4
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 5.7e-26 121.7 208 43.3
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 7.4e-26 121.3 209 42.1
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 9.7e-26 120.9 189 43.9
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.3e-25 120.6 209 44.0
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.3e-25 120.6 192 40.6
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-25 120.2 194 43.3
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.7e-25 120.2 194 43.3
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.8e-25 119.4 185 44.3
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 3.7e-25 119.0 181 43.6
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 6.3e-25 118.2 205 39.0
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.1e-24 117.5 216 38.9
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 4.1e-24 115.5 204 40.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 5.3e-24 115.2 216 40.7
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 5.3e-24 115.2 191 41.9
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 7.0e-24 114.8 151 47.0
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 9.1e-24 114.4 171 45.0
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.6e-23 113.6 183 43.7
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.6e-23 113.6 191 40.8
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 5.9e-23 111.7 190 44.2
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.0e-22 110.9 137 51.8
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.3e-22 110.5 143 51.0
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.3e-22 110.5 198 40.9
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 6.5e-22 108.2 221 41.6
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 8.5e-22 107.8 87 62.1
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.5e-21 107.1 177 42.9
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.5e-21 107.1 190 41.6
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.1e-20 103.2 198 37.4
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.7e-20 102.8 166 44.0
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 4.7e-20 102.1 158 44.9
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 8.8e-19 97.8 196 40.8
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 6.3e-17 91.7 161 39.8
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 2.4e-16 89.7 140 44.3
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 4.1e-16 89.0 169 42.6
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 9.1e-16 87.8 169 42.6
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 2.7e-15 86.3 152 40.8
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 7.7e-15 84.7 143 39.2
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 2.9e-14 82.8 87 52.9
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.9e-13 80.1 149 42.3
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 5.5e-13 78.6 138 39.9
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.4e-11 73.9 191 36.1
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.8e-11 73.6 103 44.7
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 7.5e-10 68.2 96 43.8
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 6.3e-09 65.1 83 47.0
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 8.3e-09 64.7 48 60.4
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 4.1e-08 62.4 96 47.9
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 9.1e-08 61.2 125 34.4
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 3.8e-06 55.8 57 57.9
SEGI_40815 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 5.0e-06 55.5 80 43.8
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 8.6e-06 54.7 54 53.7


User provided reference genes

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