Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 7.4e-56 220.3 112 100.0
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 2.9e-44 181.8 112 81.2
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 5.7e-40 167.5 110 80.0
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 2.8e-39 165.2 112 75.9
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.5e-32 142.9 111 70.3
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.5e-32 142.9 111 71.2
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 9.7e-32 140.2 111 69.4
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 6.5e-28 127.5 109 67.0
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 4.4e-24 114.8 108 61.1
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 7.2e-19 97.4 109 53.2
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 2.2e-15 85.9 109 51.4
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 2.2e-15 85.9 108 50.0
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.2e-15 85.9 68 64.7
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 3.7e-15 85.1 83 60.2
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 3.7e-15 85.1 67 64.2
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 6.3e-15 84.3 111 48.6
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 1.1e-14 83.6 111 47.7
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.1e-14 83.6 110 45.5
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.4e-14 83.2 67 62.7
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 1.4e-14 83.2 67 64.2
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.4e-14 83.2 83 56.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 1.8e-14 82.8 83 59.0
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 4.1e-14 81.6 75 62.7
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 5.3e-14 81.3 68 63.2
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 5.3e-14 81.3 115 49.6
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 9.1e-14 80.5 73 61.6
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 1.6e-13 79.7 81 56.8
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.0e-13 79.3 68 63.2
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 2.7e-13 79.0 68 60.3
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 4.5e-13 78.2 62 71.0
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.0e-12 77.0 105 51.4
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 1.0e-12 77.0 71 62.0
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.0e-12 77.0 68 57.4
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.7e-12 76.3 70 62.9
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.7e-12 76.3 72 59.7
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.2e-12 75.9 117 47.9
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 2.2e-12 75.9 117 47.9
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 2.2e-12 75.9 70 58.6
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 2.9e-12 75.5 71 57.7
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 3.8e-12 75.1 62 66.1
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.1e-11 73.6 74 59.5
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 1.5e-11 73.2 79 51.9
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 1.9e-11 72.8 74 59.5
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 2.5e-11 72.4 63 68.3
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 2.5e-11 72.4 61 65.6
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 4.2e-11 71.6 105 46.7
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 5.5e-11 71.2 66 59.1
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 7.2e-11 70.9 69 60.9
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 9.4e-11 70.5 102 50.0
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 9.4e-11 70.5 64 62.5
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 2.1e-10 69.3 115 43.5
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.7e-10 68.9 71 60.6
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 2.7e-10 68.9 71 60.6
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 2.7e-10 68.9 89 49.4
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 3.6e-10 68.6 110 43.6
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 3.6e-10 68.6 102 49.0
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 3.6e-10 68.6 67 55.2
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 6.1e-10 67.8 111 43.2
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 6.1e-10 67.8 68 55.9
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.0e-09 67.0 92 47.8
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.0e-09 67.0 92 47.8
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.4e-09 66.6 71 59.2
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.8e-09 66.2 111 46.8
Lalb_Chr02g0144981 Lupinus albus HOM05D007107 ORTHO05D009198 1.8e-09 66.2 88 48.9
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 5.2e-09 64.7 62 61.3
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 6.8e-09 64.3 98 43.9
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 6.8e-09 64.3 77 57.1
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 8.8e-09 63.9 57 61.4
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 1.2e-08 63.5 125 39.2
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.0e-08 62.8 71 52.1
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 2.6e-08 62.4 68 54.4
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 7.5e-08 60.8 75 56.0
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.8e-07 58.9 65 56.9
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 2.8e-07 58.9 67 53.7
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.8e-07 58.9 57 56.1
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 3.7e-07 58.5 112 42.9
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 3.7e-07 58.5 64 56.2
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 3.7e-07 58.5 64 56.2
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 4.8e-07 58.2 65 60.0
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 6.3e-07 57.8 102 43.1
Lalb_Chr25g0278741 Lupinus albus HOM05D007107 ORTHO05D009198 1.1e-06 57.0 54 63.0
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 1.4e-06 56.6 76 47.4
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.8e-06 56.2 64 54.7
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 2.4e-06 55.8 63 57.1
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 3.1e-06 55.5 62 61.3
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 3.1e-06 55.5 64 54.7
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 3.1e-06 55.5 64 54.7
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 5.4e-06 54.7 64 53.1
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 7.0e-06 54.3 122 38.5


User provided reference genes

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