Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 0.0e+00 1144.4 723 100.0
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 2.2e-278 962.2 725 82.3
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.9e-274 949.1 726 84.2
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 7.7e-231 804.3 774 73.9
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 2.8e-220 769.2 740 70.5
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 4.4e-202 708.8 809 65.4
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 2.1e-196 689.9 806 60.8
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 5.6e-189 665.2 818 55.5
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.2e-180 637.5 776 57.5
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.9e-166 589.3 726 58.5
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 7.4e-165 585.1 732 59.0
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 4.6e-151 539.3 795 52.8
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.9e-150 536.2 746 52.7
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 1.1e-147 528.1 744 55.1
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 2.0e-146 523.9 786 48.5
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 7.6e-146 521.9 911 45.3
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.0e-145 521.5 818 51.1
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 1.2e-143 514.6 918 41.4
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.2e-143 514.6 827 51.4
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 3.6e-143 513.1 809 48.2
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 3.3e-141 506.5 779 49.8
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 4.8e-140 502.7 832 50.4
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.2e-138 498.0 768 52.1
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.0e-137 495.0 822 46.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 4.2e-136 489.6 866 46.4
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 5.5e-136 489.2 787 50.8
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.7e-135 486.9 787 52.1
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 3.9e-134 483.0 845 48.3
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 6.3e-132 475.7 822 51.1
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.4e-131 474.6 769 45.5
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.4e-131 473.8 819 50.9
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.5e-130 471.1 822 49.8
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 7.7e-130 468.8 815 51.3
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.2e-128 463.0 778 46.4
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 2.1e-127 460.7 867 46.6
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 2.7e-127 460.3 826 40.4
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 2.3e-126 457.2 779 48.7
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 1.5e-125 454.5 741 49.1
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.2e-119 434.9 749 47.3
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 5.2e-118 429.5 745 51.0
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 6.7e-118 429.1 1001 41.2
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 3.5e-114 416.8 775 44.9
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 1.7e-113 414.5 730 44.2
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 5.0e-113 412.9 795 46.4
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.5e-112 410.6 812 45.8
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.2e-111 408.3 707 42.6
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 1.4e-107 394.8 719 46.9
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 4.1e-107 393.3 825 41.2
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 5.4e-107 392.9 388 60.3
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 9.1e-107 392.1 693 43.0
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 1.2e-106 391.7 833 45.1
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 2.3e-105 387.5 825 43.4
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 8.6e-105 385.6 763 45.2
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.1e-104 385.2 421 55.3
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 3.3e-104 383.6 455 53.8
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 5.5e-104 382.9 819 43.6
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 2.8e-103 380.6 444 52.3
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 8.0e-103 379.0 877 39.5
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.0e-102 378.6 886 39.1
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 4.0e-102 376.7 819 44.1
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 8.9e-102 375.6 661 50.2
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.0e-101 374.4 813 37.1
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.7e-100 370.2 426 54.0
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.1e-99 368.6 736 41.3
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.8e-99 367.9 720 45.7
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 2.4e-99 367.5 594 44.6
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.1e-99 366.7 704 41.6
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.0e-98 364.4 709 38.6
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 9.5e-96 355.5 768 42.1
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.7e-95 353.2 707 41.3
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 6.1e-95 352.8 731 43.4
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 2.2e-92 344.4 682 45.6
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.1e-91 342.0 747 43.5
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 4.1e-91 340.1 712 42.0
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.2e-90 338.6 778 42.9
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 2.0e-90 337.8 444 51.4
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.0e-90 337.8 794 41.4
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 2.7e-90 337.4 742 43.9
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 3.5e-90 337.0 711 44.4
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.5e-90 337.0 453 49.9
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 8.6e-89 332.4 680 41.2
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.1e-88 332.0 443 49.2
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 9.5e-88 328.9 731 45.8
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.6e-87 328.2 682 41.2
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 2.1e-87 327.8 743 41.9
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.1e-86 323.9 392 52.8
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 2.0e-85 321.2 440 50.5
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.2e-84 317.8 358 56.1
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 9.2e-83 312.4 445 49.7
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 3.5e-82 310.5 375 53.1
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 3.5e-82 310.5 437 48.7
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 2.1e-79 301.2 403 49.6
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 8.1e-79 299.3 414 46.9
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 2.3e-73 281.2 418 44.0
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 8.9e-70 269.2 834 37.9
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 6.4e-52 209.9 554 45.1
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.4e-51 208.8 388 38.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.4e-51 208.8 388 38.1
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.3e-44 185.7 428 38.6
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 2.9e-44 184.5 332 41.6
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 6.9e-38 163.3 178 56.7
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.5e-36 156.8 521 43.2
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 3.2e-35 154.5 387 35.9
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 3.5e-34 151.0 342 37.1
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 3.6e-26 124.4 131 54.2
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.8e-23 114.8 217 41.0
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 2.6e-21 108.2 238 37.4
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.0e-17 96.3 139 48.2
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 6.7e-17 93.6 329 36.5
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 2.0e-16 92.0 125 52.8
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 2.8e-15 88.2 65 69.2
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.2e-13 82.8 107 48.6
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 1.2e-13 82.8 63 66.7
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.0e-12 79.7 129 42.6
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 1.4e-09 69.3 58 63.8
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.1e-08 66.2 356 25.3
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 4.4e-08 64.3 47 68.1
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.3e-07 62.8 38 76.3
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.8e-07 60.8 42 76.2
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 6.3e-07 60.5 124 35.5


User provided reference genes

Program Settings