Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 6.0e-116 421.0 238 100.0
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.1e-52 209.9 126 87.3
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 3.6e-52 209.1 126 87.3
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.3e-51 206.5 126 86.5
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 5.8e-50 201.8 126 83.3
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.2e-49 199.9 126 83.3
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.2e-49 199.9 126 81.0
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 2.9e-49 199.5 126 81.7
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 2.9e-49 199.5 126 81.0
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.7e-49 199.1 126 82.5
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.7e-49 199.1 131 77.1
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 4.9e-49 198.7 126 80.2
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 6.4e-49 198.4 126 81.7
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 6.4e-49 198.4 126 80.2
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 8.3e-49 198.0 126 79.4
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 8.3e-49 198.0 126 79.4
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 8.3e-49 198.0 126 80.2
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 8.3e-49 198.0 126 80.2
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 77.8
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 80.2
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 80.2
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 80.2
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 80.2
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 80.2
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 79.4
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.1e-48 197.6 126 81.0
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.4e-48 197.2 126 79.4
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.9e-48 196.8 126 81.7
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.9e-48 196.8 126 81.7
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.9e-48 196.8 126 80.2
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.9e-48 196.8 126 80.2
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.9e-48 196.8 126 77.8
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.9e-48 196.8 126 77.8
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.2e-48 196.1 126 79.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 3.2e-48 196.1 126 78.6
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 3.2e-48 196.1 126 78.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 4.1e-48 195.7 126 79.4
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 4.1e-48 195.7 126 77.8
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 5.4e-48 195.3 126 80.2
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.4e-48 195.3 131 75.6
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 7.0e-48 194.9 127 78.0
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 7.0e-48 194.9 126 78.6
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 9.2e-48 194.5 130 74.6
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 9.2e-48 194.5 126 77.0
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.2e-48 194.5 127 76.4
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.2e-47 194.1 126 77.0
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.2e-47 194.1 126 79.4
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.2e-47 194.1 126 78.6
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.2e-47 194.1 127 79.5
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.6e-47 193.7 126 77.8
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.1e-47 193.4 126 77.0
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 2.1e-47 193.4 128 76.6
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 2.1e-47 193.4 126 77.8
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.1e-47 193.4 126 78.6
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.7e-47 193.0 124 79.8
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.5e-47 192.6 126 79.4
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 4.6e-47 192.2 126 77.0
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 6.0e-47 191.8 126 77.8
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 6.0e-47 191.8 126 77.8
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 7.8e-47 191.4 126 77.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 7.8e-47 191.4 128 76.6
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 7.8e-47 191.4 126 77.8
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 7.8e-47 191.4 126 77.0
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-46 191.0 126 77.8
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.0e-46 191.0 126 77.8
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.0e-46 191.0 126 77.8
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.0e-46 191.0 126 77.8
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.0e-46 191.0 126 77.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.0e-46 191.0 123 79.7
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.3e-46 190.7 126 77.0
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.3e-46 190.7 126 83.3
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.7e-46 190.3 126 77.8
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.7e-46 190.3 126 76.2
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.7e-46 190.3 126 76.2
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.7e-46 190.3 126 75.4
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.3e-46 189.9 126 77.0
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 3.0e-46 189.5 126 76.2
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.0e-46 189.5 126 76.2
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 3.9e-46 189.1 126 77.0
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.9e-46 189.1 126 74.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 5.1e-46 188.7 127 77.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 6.6e-46 188.3 126 77.8
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 6.6e-46 188.3 126 75.4
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 6.6e-46 188.3 126 75.4
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 8.6e-46 188.0 126 77.0
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 8.6e-46 188.0 126 74.6
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.1e-45 187.6 126 77.8
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.1e-45 187.6 126 73.8
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.1e-45 187.6 126 75.4
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.5e-45 187.2 126 77.8
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.5e-45 186.4 126 75.4
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.5e-45 186.4 126 75.4
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.5e-45 186.4 126 75.4
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 2.5e-45 186.4 126 77.0
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 3.3e-45 186.0 127 75.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.3e-45 186.0 126 73.8
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 4.3e-45 185.7 126 73.8
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 4.3e-45 185.7 126 74.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.3e-45 185.7 126 75.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 7.3e-45 184.9 127 73.2
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.2e-44 184.1 127 76.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.6e-44 182.6 126 73.8
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.2e-44 181.8 123 74.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 6.2e-44 181.8 126 74.6
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 8.1e-44 181.4 123 75.6
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.1e-43 181.0 127 73.2
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.1e-43 181.0 127 74.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-43 180.6 150 64.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.8e-43 180.3 130 70.8
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.8e-43 178.3 126 73.0
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.2e-42 177.6 124 72.6
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.5e-42 177.2 127 72.4
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.5e-42 177.2 116 77.6
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.6e-42 176.4 126 73.0
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.4e-42 176.0 124 72.6
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 7.5e-42 174.9 123 73.2
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.2e-39 167.5 126 69.0
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.2e-39 167.5 125 68.0
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.5e-39 166.0 137 62.8
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.6e-39 165.6 124 68.5
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 4.6e-39 165.6 122 72.1
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 6.0e-39 165.2 122 68.9
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.7e-38 163.7 93 84.9
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.5e-37 160.6 93 83.9
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.9e-37 160.2 120 65.8
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 4.3e-37 159.1 127 62.2
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 7.3e-37 158.3 93 80.6
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.6e-36 156.0 124 63.7
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.8e-35 153.7 121 63.6
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.8e-35 153.7 96 77.1
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.3e-33 147.5 116 65.5
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.2e-32 142.9 140 55.7
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.2e-31 141.0 150 56.0
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 3.1e-27 126.3 127 55.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 5.8e-26 122.1 117 56.4
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.3e-22 110.9 83 67.5
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 7.9e-15 85.1 71 60.6
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.1e-12 77.0 123 43.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 6.9e-11 72.0 47 74.5
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.4e-08 64.3 58 67.2


User provided reference genes

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