Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 2.3e-99 365.5 185 100.0
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 1.1e-32 144.1 88 77.3
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 2.1e-31 139.8 90 74.4
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.1e-31 139.8 90 72.2
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 2.7e-31 139.4 90 72.2
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 4.7e-31 138.7 90 72.2
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 3.9e-30 135.6 90 71.1
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 3.3e-29 132.5 91 71.4
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 6.3e-28 128.3 94 66.0
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 2.4e-27 126.3 93 63.4
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 1.2e-26 124.0 94 63.8
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.6e-26 123.6 94 62.8
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.7e-25 120.2 92 65.2
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 9.7e-21 104.4 90 56.7
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 2.0e-18 96.7 98 49.0
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 3.5e-18 95.9 93 51.6
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.3e-17 94.0 90 50.0
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.5e-17 91.3 93 47.3
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.5e-16 90.5 93 51.6
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.5e-16 90.5 93 51.6
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 2.5e-16 89.7 93 51.6
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 3.2e-16 89.4 93 50.5
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 4.2e-16 89.0 92 50.0
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 9.4e-16 87.8 90 52.2
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 9.4e-16 87.8 94 46.8
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.2e-15 87.4 91 48.4
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 1.2e-15 87.4 91 48.4
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.2e-15 87.4 96 46.9
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 3.6e-15 85.9 93 51.6
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 3.6e-15 85.9 95 46.3
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 6.1e-15 85.1 95 44.2
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.4e-14 84.0 103 46.6
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.8e-14 83.6 92 47.8
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 2.3e-14 83.2 86 48.8
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 3.0e-14 82.8 89 49.4
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.0e-14 82.8 96 44.8
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 3.0e-14 82.8 93 46.2
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.8e-14 81.6 90 46.7
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 6.8e-14 81.6 93 47.3
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 6.8e-14 81.6 93 49.5
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 8.8e-14 81.3 91 49.5
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 8.8e-14 81.3 93 45.2
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 8.8e-14 81.3 93 45.2
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.2e-13 80.9 90 44.4
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 2.6e-13 79.7 88 48.9
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 3.4e-13 79.3 88 47.7
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 5.7e-13 78.6 91 49.5
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 9.8e-13 77.8 96 44.8
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.3e-12 77.4 91 45.1
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.3e-12 77.4 93 43.0
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 2.8e-12 76.3 90 45.6
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 2.8e-12 76.3 93 46.2
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 2.8e-12 76.3 93 46.2
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 4.8e-12 75.5 85 52.9
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 8.3e-12 74.7 94 41.5
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 1.1e-11 74.3 85 44.7
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.1e-11 74.3 91 44.0
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.8e-11 73.6 90 43.3
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.4e-11 73.2 88 47.7
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 4.1e-11 72.4 90 38.9
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 5.4e-11 72.0 91 41.8
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 9.1e-11 71.2 93 41.9
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.2e-10 70.9 91 41.8
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 2.7e-10 69.7 83 43.4
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.5e-10 69.3 98 38.8
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 3.5e-10 69.3 91 45.1
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 3.5e-10 69.3 90 43.3
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 4.5e-10 68.9 89 44.9
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 4.5e-10 68.9 89 41.6
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 5.9e-10 68.6 90 40.0
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 5.9e-10 68.6 84 42.9
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 7.7e-10 68.2 96 42.7
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 1.0e-09 67.8 85 41.2
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.3e-09 67.4 92 44.6
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.3e-09 67.4 100 38.0
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.7e-09 67.0 91 44.0
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.8e-09 65.9 98 37.8
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.8e-09 65.9 91 39.6
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 5.0e-09 65.5 93 44.1
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 5.0e-09 65.5 93 44.1
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 8.6e-09 64.7 93 43.0
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.1e-08 64.3 91 38.5
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.1e-08 64.3 91 39.6
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 1.5e-08 63.9 93 40.9
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 1.5e-08 63.9 95 38.9
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.5e-08 63.9 93 38.7
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.2e-08 62.8 89 41.6
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 3.2e-08 62.8 88 39.8
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 4.2e-08 62.4 93 41.9
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 4.2e-08 62.4 93 41.9
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 4.2e-08 62.4 94 39.4
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 5.5e-08 62.0 94 40.4
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 5.5e-08 62.0 94 40.4
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 7.2e-08 61.6 93 41.9
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 7.2e-08 61.6 93 45.2
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-07 60.5 100 38.0
Glyma.06G298400 Glycine max HOM05D004838 ORTHO05D005373 2.1e-07 60.1 90 42.2
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 2.8e-07 59.7 93 38.7
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 3.6e-07 59.3 93 39.8
Sabra19G0118000 Salix brachista HOM05D000831 ORTHO05D000660 3.6e-07 59.3 188 27.1
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 4.7e-07 58.9 91 39.6
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 4.7e-07 58.9 87 43.7
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 6.1e-07 58.5 91 40.7
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 8.0e-07 58.2 90 34.4
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.0e-06 57.8 96 34.4
FAN14G0972 Fragaria x ananassa HOM05D000831 ORTHO05D000660 1.8e-06 57.0 196 26.0
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 4.0e-06 55.8 91 37.4
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 4.0e-06 55.8 91 36.3
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 5.2e-06 55.5 91 37.4
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 5.2e-06 55.5 91 37.4
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 5.2e-06 55.5 91 37.4
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 5.2e-06 55.5 91 37.4
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 5.2e-06 55.5 91 37.4
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 5.2e-06 55.5 93 34.4
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 8.8e-06 54.7 88 38.6
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 8.8e-06 54.7 75 41.3


User provided reference genes

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