Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27044 Trifolium pratense HOM05D000055 ORTHO05D003892 2.6e-71 271.9 136 100.0
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 1.9e-45 186.0 94 98.9
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 4.2e-45 184.9 94 96.8
Ca_01420_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 1.2e-44 183.3 94 96.8
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 4.6e-44 181.4 94 93.6
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 7.9e-44 180.6 124 77.4
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 7.9e-44 180.6 122 77.9
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 3.0e-43 178.7 124 76.6
VMungo1127G1522 Vigna mungo HOM05D000055 ORTHO05D003892 3.0e-43 178.7 124 76.6
Medtr4g059560 Medicago truncatula HOM05D000055 ORTHO05D003892 5.1e-43 177.9 124 75.0
Glyma.13G326900 Glycine max HOM05D000055 ORTHO05D003892 6.7e-43 177.6 94 92.6
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 8.7e-43 177.2 124 75.8
Glyma.12G068500 Glycine max HOM05D000055 ORTHO05D003892 5.6e-42 174.5 124 75.8
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 5.6e-42 174.5 124 73.4
Phvul.005G135922 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 9.6e-42 173.7 94 89.4
Thecc.09G257000 Theobroma cacao HOM05D000055 ORTHO05D003892 9.6e-42 173.7 94 89.4
Lj3g0014873 Lotus japonicus HOM05D000055 ORTHO05D003892 1.3e-41 173.3 94 89.4
Glyma.11G147500 Glycine max HOM05D000055 ORTHO05D003892 1.6e-41 172.9 124 75.0
CiPaw.13G112000 Carya illinoinensis HOM05D000055 ORTHO05D003892 2.1e-41 172.6 94 89.4
Lalb_Chr01g0004251 Lupinus albus HOM05D000055 ORTHO05D003892 2.1e-41 172.6 124 74.2
Gorai.009G078200 Gossypium raimondii HOM05D000055 ORTHO05D003892 4.8e-41 171.4 94 88.3
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 6.2e-41 171.0 94 88.3
Eucgr.B02491 Eucalyptus grandis HOM05D000055 ORTHO05D003892 1.1e-40 170.2 94 88.3
THA.LOC104799499 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 1.1e-40 170.2 124 71.0
VMungo1080G1375 Vigna mungo HOM05D000055 ORTHO05D003892 1.1e-40 170.2 94 89.4
Cpa.g.sc216.16 Carica papaya HOM05D000055 ORTHO05D003892 1.4e-40 169.9 94 85.1
ClCG02G021100 Citrullus lanatus HOM05D000055 ORTHO05D003892 1.4e-40 169.9 113 75.2
Lalb_Chr19g0137341 Lupinus albus HOM05D000055 ORTHO05D003892 1.4e-40 169.9 94 90.4
TAR636G2561 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.4e-40 169.9 94 87.2
Duzib168G0484 Durio zibethinus HOM05D000055 ORTHO05D003892 1.8e-40 169.5 94 85.1
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 1.8e-40 169.5 94 87.2
Gohir.A05G073900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.8e-40 169.5 94 87.2
MELO3C025767.2 Cucumis melo HOM05D000055 ORTHO05D003892 2.4e-40 169.1 94 86.2
CsaV3_6G013850 Cucumis sativus L. HOM05D000055 ORTHO05D003892 2.4e-40 169.1 94 86.2
Gohir.A07G117900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 3.1e-40 168.7 125 70.4
Rhsim13G0093800 Rhododendron simsii HOM05D000055 ORTHO05D003892 3.1e-40 168.7 94 87.2
vmacro03192 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 3.1e-40 168.7 94 87.2
arahy.Tifrunner.gnm1.ann1.E1CD9Y Arachis hypogaea HOM05D000055 ORTHO05D003892 5.3e-40 167.9 94 86.2
arahy.Tifrunner.gnm1.ann1.E5GBGH Arachis hypogaea HOM05D000055 ORTHO05D003892 5.3e-40 167.9 94 86.2
THA.LOC104810850 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 5.3e-40 167.9 94 86.2
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 5.3e-40 167.9 94 86.2
CSS0032288 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D003892 1.2e-39 166.8 94 87.2
Gohir.D07G122200 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.2e-39 166.8 125 69.6
Gorai.001G132000 Gossypium raimondii HOM05D000055 ORTHO05D003892 1.2e-39 166.8 125 69.6
Duzib150G1261 Durio zibethinus HOM05D000055 ORTHO05D003892 1.5e-39 166.4 94 86.2
QL01p022404 Quercus lobata HOM05D000055 ORTHO05D003892 1.5e-39 166.4 94 85.1
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 1.5e-39 166.4 94 85.1
Atru.chr3.3642 Acer truncatum HOM05D000055 ORTHO05D003892 2.0e-39 166.0 94 85.1
FvH4_3g32550 Fragaria vesca HOM05D000055 ORTHO05D003892 2.6e-39 165.6 94 85.1
FAN25G2930 Fragaria x ananassa HOM05D000055 ORTHO05D003892 2.6e-39 165.6 94 85.1
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 2.6e-39 165.6 94 84.0
RcHm_v2.0_Chr5g0059631 Rosa chinensis HOM05D000055 ORTHO05D003892 2.6e-39 165.6 94 85.1
Cfa011330 Carpinus fangiana HOM05D000055 ORTHO05D003892 3.4e-39 165.2 94 84.0
ECA248G2155 Erigeron canadensis HOM05D000055 ORTHO05D003892 3.4e-39 165.2 94 85.1
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 4.5e-39 164.9 94 86.2
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 4.5e-39 164.9 97 83.5
Lalb_Chr22g0350221 Lupinus albus HOM05D000055 ORTHO05D003892 7.6e-39 164.1 124 68.5
TAR633G0710 Trochodendron aralioides HOM05D000055 ORTHO05D003892 7.6e-39 164.1 94 85.1
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 7.6e-39 164.1 94 85.1
CAN.G631.17 Capsicum annuum HOM05D000055 ORTHO05D003892 9.9e-39 163.7 94 85.1
Dinv32758 Davidia involucrata HOM05D000055 ORTHO05D003892 9.9e-39 163.7 94 86.2
Lj1C190G12 Lonicera japonica HOM05D000055 ORTHO05D003892 1.3e-38 163.3 94 85.1
Sed0006682 Sechium edule HOM05D000614 ORTHO05D003892 1.3e-38 163.3 94 85.1
Actinidia03736 Actinidia chinensis HOM05D000055 ORTHO05D003892 1.7e-38 162.9 94 84.0
ATR0115G016 Amborella trichopoda HOM05D000055 ORTHO05D003892 1.7e-38 162.9 94 84.0
Gohir.A08G008700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 2.2e-38 162.5 94 81.9
Lj2A1030G59 Lonicera japonica HOM05D000055 ORTHO05D003892 2.2e-38 162.5 94 83.0
Actinidia20449 Actinidia chinensis HOM05D000055 ORTHO05D003892 2.9e-38 162.2 94 83.0
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 2.9e-38 162.2 94 85.1
MD11G1134400 Malus domestica HOM05D000055 ORTHO05D003892 2.9e-38 162.2 94 85.1
Oeu002458.1 Olea europaea HOM05D000055 ORTHO05D003892 2.9e-38 162.2 94 83.0
Sc06g0006930 Simmondsia chinensis HOM05D000055 ORTHO05D003892 2.9e-38 162.2 94 83.0
Rhsim01G0217700 Rhododendron simsii HOM05D000055 ORTHO05D003892 3.8e-38 161.8 94 81.9
CiPaw.14G079900 Carya illinoinensis HOM05D000055 ORTHO05D003892 4.9e-38 161.4 94 83.0
Sp6g22120 Schrenkiella parvula HOM05D000055 ORTHO05D003892 4.9e-38 161.4 94 81.9
Actinidia07130 Actinidia chinensis HOM05D000055 ORTHO05D003892 6.4e-38 161.0 94 85.1
Thhalv10013666m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 6.4e-38 161.0 94 81.9
Prupe.6G100200 Prunus persica HOM05D000055 ORTHO05D003892 6.4e-38 161.0 94 84.0
BcaB08g36351 Brassica carinata HOM05D000055 ORTHO05D003892 8.4e-38 160.6 94 81.9
BcaC04g19713 Brassica carinata HOM05D000055 ORTHO05D003892 8.4e-38 160.6 94 81.9
C09p53200 Brassica napus HOM05D000055 ORTHO05D003892 8.4e-38 160.6 94 81.9
BolC9t58195H Brassica oleracea HOM05D000055 ORTHO05D003892 8.4e-38 160.6 94 81.9
CANSAT54G2619 Cannabis sativa HOM05D000055 ORTHO05D003892 8.4e-38 160.6 94 83.0
PGR102G0854 Punica granatum HOM05D000055 ORTHO05D003892 8.4e-38 160.6 94 83.0
Ciclev10028546m.g Citrus clementina HOM05D000055 ORTHO05D003892 1.1e-37 160.2 94 83.0
FAN11G2098 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.1e-37 160.2 97 82.5
FAN21G3773 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.1e-37 160.2 97 82.5
FAN16G0066 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.4e-37 159.8 97 82.5
Gohir.D08G018700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.9e-37 159.5 94 80.9
Gorai.004G013200 Gossypium raimondii HOM05D000055 ORTHO05D003892 1.9e-37 159.5 94 80.9
Manes.04G022100 Manihot esculenta HOM05D000055 ORTHO05D003892 1.9e-37 159.5 94 81.9
Manes.11G144200 Manihot esculenta HOM05D000055 ORTHO05D003892 1.9e-37 159.5 94 81.9
Sopen11g028030 Solanum pennellii HOM05D000055 ORTHO05D003892 1.9e-37 159.5 94 80.9
Aa31LG1G12540 Aethionema arabicum HOM05D000055 ORTHO05D003892 2.4e-37 159.1 94 78.7
MSTRG.17813 Avicennia marina HOM05D000055 ORTHO05D003892 2.4e-37 159.1 94 81.9
Ah.08g216770 Amaranthus hybridus HOM05D000055 ORTHO05D003892 3.2e-37 158.7 94 81.9
AT3G45240 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 3.2e-37 158.7 94 81.9
Nitab4.5_0003701g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 3.2e-37 158.7 94 81.9
BcaB05g22653 Brassica carinata HOM05D000055 ORTHO05D003892 4.2e-37 158.3 94 81.9
DCAR_006057 Daucus carota HOM05D000055 ORTHO05D003892 4.2e-37 158.3 115 67.0
Nitab4.5_0000181g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 4.2e-37 158.3 94 83.0
Nitab4.5_0000650g0130 Nicotiana tabacum HOM05D000055 ORTHO05D003892 4.2e-37 158.3 94 80.9
Nitab4.5_0011503g0020 Nicotiana tabacum HOM05D000055 ORTHO05D003892 4.2e-37 158.3 94 83.0
Sabra09G0008400 Salix brachista HOM05D000055 ORTHO05D003892 4.2e-37 158.3 126 65.1
PGSC0003DMG400008108 Solanum tuberosum HOM05D000055 ORTHO05D003892 4.2e-37 158.3 94 81.9
AL5G23810 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 5.5e-37 157.9 94 81.9
EL10Ac7g16406 Beta vulgaris HOM05D000055 ORTHO05D003892 5.5e-37 157.9 94 81.9
Cc01_g11240 Coffea canephora HOM05D000055 ORTHO05D003892 5.5e-37 157.9 94 81.9
A10p17740 Brassica napus HOM05D000055 ORTHO05D003892 7.1e-37 157.5 94 80.9
BraA10t43852Z Brassica rapa HOM05D000055 ORTHO05D003892 7.1e-37 157.5 94 80.9
Aqoxy1G01251 Aquilegia oxysepala HOM05D000055 ORTHO05D003892 9.3e-37 157.1 94 83.0
PSO339G3375 Papaver somniferum HOM05D000055 ORTHO05D003892 9.3e-37 157.1 94 78.7
PSO384G4136 Papaver somniferum HOM05D000055 ORTHO05D003892 9.3e-37 157.1 94 78.7
MSTRG.21130 Avicennia marina HOM05D000055 ORTHO05D003892 1.2e-36 156.8 94 80.9
Carub.0005s1102 Capsella rubella HOM05D000055 ORTHO05D003892 1.2e-36 156.8 94 81.9
Haze_23862 Corylus avellana HOM05D000055 ORTHO05D003892 1.2e-36 156.8 105 75.2
Nn2g10768 Nelumbo nucifera HOM05D000055 ORTHO05D003892 1.2e-36 156.8 94 80.9
Potri.009G012900 Populus trichocarpa HOM05D000055 ORTHO05D003892 1.2e-36 156.8 126 65.1
Hund05740 Selenicereus undatus HOM05D000055 ORTHO05D003892 1.6e-36 156.4 96 79.2
PSO063G7525 Papaver somniferum HOM05D000055 ORTHO05D003892 2.7e-36 155.6 94 81.9
SGA_v2.0_scaffold97G29216 Striga asiatica HOM05D000055 ORTHO05D003892 2.7e-36 155.6 94 79.8
unitig_747.g22000 Utricularia gibba HOM05D000055 ORTHO05D003892 2.7e-36 155.6 94 80.9
AT5G60550 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 3.5e-36 155.2 94 78.7
Sp5g16060 Schrenkiella parvula HOM05D000055 ORTHO05D003892 3.5e-36 155.2 94 79.8
Carub.0008s2124 Capsella rubella HOM05D000055 ORTHO05D003892 4.6e-36 154.8 94 78.7
CDE07G1595 Ceratophyllum demersum HOM05D000055 ORTHO05D003892 4.6e-36 154.8 94 79.8
Thhalv10002549m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 4.6e-36 154.8 94 79.8
vmacro14443 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 4.6e-36 154.8 90 81.1
BcaC03g13960 Brassica carinata HOM05D000055 ORTHO05D003892 6.0e-36 154.5 94 80.9
C02p11590 Brassica napus HOM05D000055 ORTHO05D003892 6.0e-36 154.5 94 80.9
BolC2t07246H Brassica oleracea HOM05D000055 ORTHO05D003892 6.0e-36 154.5 94 80.9
BraA02t05716Z Brassica rapa HOM05D000055 ORTHO05D003892 6.0e-36 154.5 94 80.9
AL8G37140 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 7.9e-36 154.1 94 77.7
PSO339G0350 Papaver somniferum HOM05D000055 ORTHO05D003892 1.8e-35 152.9 94 80.9
Aa31LG4G14560 Aethionema arabicum HOM05D000055 ORTHO05D003892 3.0e-35 152.1 94 78.7
CARHR274210 Cardamine hirsuta HOM05D000055 ORTHO05D003892 3.0e-35 152.1 94 77.7
Sabra04G0142300 Salix brachista HOM05D000055 ORTHO05D003892 3.0e-35 152.1 129 62.0
SalBow3G2078 Salvia bowleyana HOM05D000055 ORTHO05D003892 3.0e-35 152.1 94 77.7
Hma1.2p1_1031F.1_g249950 Hydrangea macrophylla HOM05D000055 ORTHO05D003892 3.9e-35 151.8 94 79.8
SEGI_17972 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 5.1e-35 151.4 94 77.7
CARHR150700 Cardamine hirsuta HOM05D000055 ORTHO05D003892 8.7e-35 150.6 94 77.7
AUR62001489 Chenopodium quinoa HOM05D000055 ORTHO05D003892 8.7e-35 150.6 94 77.7
Ca_05252_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 1.5e-34 149.8 154 56.5
HPP92_012805 Vanilla planifolia HOM05D000055 ORTHO05D003892 1.5e-34 149.8 94 76.6
Ah.15g094100 Amaranthus hybridus HOM05D000055 ORTHO05D003892 3.7e-33 145.2 94 74.5
Migut.O00632 Erythranthe guttata HOM05D000055 ORTHO05D003892 1.4e-32 143.3 94 73.4
HPP92_005398 Vanilla planifolia HOM05D000055 ORTHO05D003892 3.1e-32 142.1 99 73.7
Mapoly0069s0064 Marchantia polymorpha HOM05D000055 ORTHO05D003892 1.2e-31 140.2 96 71.9
Pp3c22_18850 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.2e-31 140.2 94 71.3
Os03g0711300 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D003892 3.8e-30 135.2 94 71.3
MBI19_g17414_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 4.9e-30 134.8 92 72.8
Pp3c2_14270 Physcomitrium patens HOM05D000055 ORTHO05D003892 6.5e-30 134.4 94 71.3
SEGI_38168 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 8.4e-30 134.0 96 66.7
SalBow3G0288 Salvia bowleyana HOM05D000055 ORTHO05D003892 1.9e-29 132.9 103 66.0
MBI07_g19318_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 3.2e-29 132.1 94 73.4
Zm00001eb427480 Zea mays HOM05D000055 ORTHO05D003892 9.3e-29 130.6 94 69.1
Zm00001eb075500 Zea mays HOM05D000055 ORTHO05D003892 1.0e-27 127.1 94 66.0
Pp3c1_23490 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.3e-27 126.7 94 68.1
Potri.001G010700 Populus trichocarpa HOM05D000055 ORTHO05D003892 1.9e-26 122.9 114 59.6
SEGI_01883 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.9e-26 122.9 89 66.3
SMO275G0017 Selaginella moellendorffii HOM05D000055 ORTHO05D003892 3.3e-26 122.1 122 55.7
Gohir.D05G076800 Gossypium hirsutum HOM05D000055 ORTHO05D003892 4.3e-26 121.7 68 88.2
TPR.G23906 Trifolium pratense HOM05D000055 ORTHO05D003892 3.7e-25 118.6 64 92.2
Duzib106G1552 Durio zibethinus HOM05D000055 ORTHO05D003892 4.8e-25 118.2 92 64.1
Potri.003G215201 Populus trichocarpa HOM05D000055 ORTHO05D003892 4.8e-25 118.2 92 64.1
Sabra03G0160600 Salix brachista HOM05D000055 ORTHO05D003892 1.1e-24 117.1 92 65.2
GSVIVG01025378001 Vitis vinifera HOM05D000055 ORTHO05D003892 2.4e-24 115.9 88 64.8
Atru.chr3.2173 Acer truncatum HOM05D000055 ORTHO05D003892 6.9e-24 114.4 99 59.6
SEGI_03957 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.2e-23 113.6 94 61.7
Solyc11g069300.2 Solanum lycopersicum HOM05D000055 ORTHO05D003892 1.2e-23 113.6 78 70.5
Thecc.10G171700 Theobroma cacao HOM05D000055 ORTHO05D003892 1.2e-23 113.6 88 64.8
DCAR_015541 Daucus carota HOM05D000055 ORTHO05D003892 3.4e-23 112.1 65 84.6
Peaxi162Scf00270g00098 Petunia axillaris HOM05D000055 ORTHO05D003892 6.5e-22 107.8 97 61.9
Pp3c10_8000 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.4e-21 106.7 84 61.9
HPP92_020313 Vanilla planifolia HOM05D010659 ORTHO05D003892 1.0e-14 84.0 115 40.0
TPR.G31308 Trifolium pratense HOM05D000055 ORTHO05D003892 2.7e-12 75.9 37 100.0
Cfa022288 Carpinus fangiana HOM05D000431 ORTHO05D122229 1.5e-10 70.1 92 39.1
Mapoly0028s0019 Marchantia polymorpha HOM05D000055 ORTHO05D003892 2.6e-10 69.3 95 43.2
PRCOL_00005369 Prasinoderma coloniale HOM05D000055 ORTHO05D003892 2.6e-10 69.3 94 42.6
Duzib114G0286 Durio zibethinus HOM05D000055 ORTHO05D003892 9.7e-10 67.4 45 73.3
PRCOL_00001815 Prasinoderma coloniale HOM05D000055 ORTHO05D003892 9.7e-10 67.4 98 38.8
Pp3c11_20920 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.1e-08 63.9 97 39.2
TAR633G1429 Trochodendron aralioides HOM05D000055 ORTHO05D414604 2.4e-08 62.8 38 76.3
CBR_g17887 Chara braunii HOM05D000055 ORTHO05D003892 3.4e-07 58.9 87 39.1
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 2.2e-06 56.2 34 76.5
Cre10.g428650 Chlamydomonas reinhardtii HOM05D000055 ORTHO05D003892 3.8e-06 55.5 88 38.6
MCO13G322 Micromonas commoda HOM05D000055 ORTHO05D003892 6.5e-06 54.7 99 34.3


User provided reference genes

Program Settings