Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 4.6e-66 254.6 145 100.0
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 1.8e-25 119.8 66 86.4
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 7.4e-24 114.4 64 85.9
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 1.0e-20 104.0 63 79.4
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 5.5e-19 98.2 61 77.0
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 5.5e-19 98.2 98 58.2
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 9.3e-19 97.4 60 78.3
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 2.1e-18 96.3 61 75.4
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 3.5e-18 95.5 55 83.6
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 3.9e-17 92.0 55 83.6
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 5.1e-17 91.7 60 78.3
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 1.9e-16 89.7 58 74.1
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 2.5e-16 89.4 55 78.2
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 3.3e-16 89.0 57 77.2
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 3.3e-16 89.0 56 76.8
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 3.3e-16 89.0 50 86.0
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 4.3e-16 88.6 50 84.0
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 5.7e-16 88.2 59 72.9
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 5.7e-16 88.2 56 75.0
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 9.7e-16 87.4 53 81.1
TPR.G26978 Trifolium pratense HOM05D008240 ORTHO05D010333 9.7e-16 87.4 83 77.1
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.3e-15 87.0 60 71.7
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.3e-15 87.0 60 71.7
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 1.3e-15 87.0 60 71.7
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 2.2e-15 86.3 59 72.9
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 3.7e-15 85.5 53 79.2
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 4.8e-15 85.1 63 68.3
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 6.3e-15 84.7 53 75.5
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 8.2e-15 84.3 63 71.4
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 2.4e-14 82.8 56 73.2
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 3.1e-14 82.4 49 81.6
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 4.1e-14 82.0 56 73.2
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 5.3e-14 81.6 53 73.6
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 5.3e-14 81.6 53 73.6
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 5.3e-14 81.6 66 63.6
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 5.3e-14 81.6 65 64.6
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 6.9e-14 81.3 56 73.2
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 6.9e-14 81.3 51 78.4
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 9.0e-14 80.9 63 61.9
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 1.5e-13 80.1 54 75.9
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 5.9e-13 78.2 48 77.1
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 7.7e-13 77.8 58 65.5
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 7.7e-13 77.8 58 65.5
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 1.3e-12 77.0 56 67.9
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 2.2e-12 76.3 54 68.5
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 2.2e-12 76.3 71 56.3
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 2.9e-12 75.9 52 75.0
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 3.8e-12 75.5 54 68.5
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 5.0e-12 75.1 49 71.4
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 5.0e-12 75.1 49 71.4
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 5.0e-12 75.1 55 67.3
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 1.4e-11 73.6 51 64.7
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 2.5e-11 72.8 46 71.7
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 2.5e-11 72.8 45 77.8
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 4.2e-11 72.0 52 69.2
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 7.2e-11 71.2 51 60.8
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 1.6e-10 70.1 54 64.8
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 3.9e-09 65.5 59 62.7
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 5.1e-09 65.1 39 76.9
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 6.7e-09 64.7 68 52.9
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 1.5e-08 63.5 43 72.1
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 1.5e-08 63.5 40 77.5
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 1.3e-07 60.5 47 59.6
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 5.3e-06 55.1 47 55.3


User provided reference genes

Program Settings