Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 3.3e-79 298.5 175 100.0
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 5.0e-43 178.3 125 84.0
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 1.5e-42 176.8 125 84.0
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.4e-39 165.6 120 91.7
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.4e-39 165.6 120 91.7
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 1.6e-33 146.7 125 80.0
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 1.6e-33 146.7 120 74.2
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 4.7e-33 145.2 123 72.4
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 5.2e-32 141.7 120 72.5
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 6.8e-32 141.4 122 73.8
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 1.3e-30 137.1 127 63.8
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 1.3e-30 137.1 127 78.7
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 3.2e-29 132.5 124 80.6
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 8.6e-19 97.8 110 75.5
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 9.5e-18 94.4 75 68.0
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 1.4e-16 90.5 47 91.5
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.8e-16 90.1 49 87.8
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 4.0e-16 89.0 46 91.3
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 4.0e-16 89.0 46 91.3
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 4.0e-16 89.0 46 91.3
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 4.0e-16 89.0 46 91.3
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 1.2e-15 87.4 66 69.7
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.2e-15 87.4 74 62.2
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 1.5e-15 87.0 45 91.1
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.5e-15 87.0 45 91.1
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.5e-15 87.0 49 85.7
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.5e-15 87.0 45 88.9
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 2.0e-15 86.7 70 64.3
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 2.0e-15 86.7 64 65.6
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 4.4e-15 85.5 48 83.3
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 4.4e-15 85.5 44 90.9
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 7.6e-15 84.7 46 87.0
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 9.9e-15 84.3 48 81.2
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 9.9e-15 84.3 70 64.3
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 1.7e-14 83.6 45 86.7
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.7e-14 83.6 44 86.4
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.7e-14 83.6 44 86.4
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.7e-14 83.6 44 86.4
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.7e-14 83.6 44 86.4
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.9e-14 82.8 46 82.6
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 4.9e-14 82.0 55 78.2
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 6.4e-14 81.6 50 76.0
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 6.4e-14 81.6 65 64.6
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 8.4e-14 81.3 60 73.3
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 3.2e-13 79.3 44 84.1
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 4.1e-13 79.0 64 64.1
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 5.4e-13 78.6 41 85.4
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 5.4e-13 78.6 44 84.1
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 5.4e-13 78.6 44 84.1
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 5.4e-13 78.6 44 84.1
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 7.1e-13 78.2 57 68.4
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 9.2e-13 77.8 44 84.1
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 9.2e-13 77.8 77 57.1
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 9.2e-13 77.8 77 59.7
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 9.2e-13 77.8 65 66.2
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 9.2e-13 77.8 46 82.6
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.1e-12 76.6 36 94.4
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 2.1e-12 76.6 57 70.2
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 3.5e-12 75.9 41 85.4
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 3.5e-12 75.9 43 83.7
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 3.5e-12 75.9 68 60.3
VMungo1309G1684 Vigna mungo HOM05D006246 ORTHO05D007932 3.5e-12 75.9 123 65.0
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 4.6e-12 75.5 39 82.1
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 4.6e-12 75.5 64 65.6
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 4.6e-12 75.5 46 73.9
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 4.6e-12 75.5 64 62.5
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 6.0e-12 75.1 70 61.4
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 6.0e-12 75.1 43 81.4
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 6.0e-12 75.1 65 61.5
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 7.8e-12 74.7 46 73.9
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 1.0e-11 74.3 45 75.6
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 1.0e-11 74.3 45 75.6
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.7e-11 73.6 45 73.3
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.7e-11 73.6 45 73.3
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 1.7e-11 73.6 35 91.4
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 1.7e-11 73.6 34 94.1
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 2.3e-11 73.2 70 60.0
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 5.1e-11 72.0 43 69.8
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 6.6e-11 71.6 43 74.4
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 6.6e-11 71.6 46 69.6
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 8.6e-11 71.2 65 61.5
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 1.1e-10 70.9 64 62.5
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 1.1e-10 70.9 58 65.5
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 1.5e-10 70.5 44 72.7
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 1.9e-10 70.1 70 54.3
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.9e-10 70.1 83 51.8
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 2.5e-10 69.7 35 85.7
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 4.3e-10 68.9 41 78.0
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 5.6e-10 68.6 51 68.6
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 5.6e-10 68.6 41 78.0
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 7.3e-10 68.2 38 78.9
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 7.3e-10 68.2 37 81.1
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 9.6e-10 67.8 41 75.6
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 2.1e-09 66.6 61 57.4
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 2.4e-08 63.2 59 59.3
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 8.9e-08 61.2 68 51.5
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 3.4e-07 59.3 57 56.1
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.8e-07 58.5 37 70.3
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 2.2e-06 56.6 39 74.4
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 2.2e-06 56.6 39 74.4
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 4.9e-06 55.5 75 54.7


User provided reference genes

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