Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 3.4e-164 581.6 299 100.0
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.4e-133 479.2 297 84.2
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 1.7e-131 473.0 297 83.2
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 3.0e-112 409.1 301 73.8
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 3.2e-98 362.5 302 65.6
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.7e-94 349.0 304 63.2
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 4.8e-94 348.6 297 63.3
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.4e-90 337.0 301 61.5
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 7.9e-89 331.3 236 78.4
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.0e-88 329.3 335 55.5
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.7e-86 323.6 298 62.1
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 5.3e-85 318.5 338 53.6
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.9e-82 310.1 289 59.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 2.7e-81 306.2 295 61.0
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 3.0e-80 302.8 303 56.4
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.0e-76 290.0 303 55.4
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.6e-76 289.7 304 56.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 5.2e-64 248.8 314 47.5
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.2e-60 237.7 306 48.0
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.5e-60 236.1 326 45.1
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-59 234.2 304 49.0
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.5e-58 230.7 311 44.1
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 2.5e-58 229.9 315 44.1
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 7.2e-58 228.4 310 42.3
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.2e-57 227.6 302 43.7
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.6e-57 227.3 300 44.3
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.7e-57 226.5 306 44.8
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 6.1e-57 225.3 315 42.9
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.3e-56 223.4 317 42.9
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 4.0e-56 222.6 311 41.2
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 5.2e-56 222.2 321 45.2
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.2e-56 222.2 330 41.8
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 1.7e-54 217.2 315 41.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.8e-54 216.5 310 43.5
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.8e-54 216.5 310 43.5
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 4.8e-54 215.7 309 41.1
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.8e-54 215.7 310 43.9
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 4.8e-54 215.7 315 41.0
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 8.3e-54 214.9 295 41.7
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.8e-53 213.8 312 42.0
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 3.1e-53 213.0 308 43.2
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 9.1e-53 211.5 313 42.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.6e-52 210.7 306 43.5
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 4.5e-52 209.1 317 42.9
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.1e-50 204.5 306 42.2
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.1e-50 204.5 303 40.3
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.1e-50 204.5 309 41.4
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-50 204.1 295 43.4
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 4.2e-50 202.6 305 41.3
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.6e-49 200.7 296 41.6
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.1e-49 200.3 298 41.6
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 2.8e-49 199.9 304 41.4
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 3.6e-49 199.5 301 40.5
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 8.0e-49 198.4 300 41.7
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 2.3e-48 196.8 280 43.2
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 8.9e-48 194.9 302 41.1
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 1.2e-47 194.5 315 40.3
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.2e-47 194.5 315 40.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.2e-47 194.5 315 40.0
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.0e-47 193.7 330 39.7
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 3.4e-47 193.0 312 38.5
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 9.8e-47 191.4 275 42.9
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.7e-46 190.7 311 41.2
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.7e-46 190.7 313 39.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.2e-46 190.3 302 38.7
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 4.9e-46 189.1 304 39.1
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.8e-45 187.2 307 41.0
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 3.1e-45 186.4 307 38.8
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 5.4e-45 185.7 305 41.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 5.4e-45 185.7 308 40.6
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 7.0e-45 185.3 297 40.4
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 9.2e-45 184.9 308 41.6
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.2e-44 184.5 315 39.7
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.6e-44 184.1 356 35.1
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.6e-44 184.1 320 39.4
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.0e-44 183.7 308 37.7
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.7e-44 183.3 318 37.4
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.0e-43 181.4 292 40.4
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.0e-43 181.4 292 40.4
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.0e-43 181.4 294 38.4
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.7e-43 180.6 297 38.0
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.3e-43 180.3 315 38.4
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 6.6e-43 178.7 323 39.6
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 8.6e-43 178.3 320 40.3
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 1.1e-42 177.9 293 38.6
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 4.3e-42 176.0 312 37.2
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 5.6e-42 175.6 292 40.8
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.2e-41 174.5 285 39.3
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 4.7e-41 172.6 292 38.0
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 4.7e-41 172.6 305 37.7
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.0e-40 171.4 307 40.7
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 2.3e-40 170.2 325 36.9
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.4e-39 166.4 285 38.6
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 5.8e-39 165.6 372 34.7
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.3e-38 164.5 300 35.7
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 8.3e-38 161.8 315 35.6
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 2.0e-36 157.1 365 32.6
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 4.6e-36 156.0 343 34.4
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.6e-36 156.0 309 37.2
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 1.7e-35 154.1 305 36.4
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.7e-35 154.1 309 33.0
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.3e-35 153.7 302 35.8
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.9e-35 152.9 230 47.4
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 6.6e-35 152.1 294 33.3
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.5e-34 151.0 340 35.0
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.6e-34 149.1 234 45.3
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.1e-33 147.1 286 37.4
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.1e-32 144.8 286 33.6
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 8.9e-32 141.7 309 35.3
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 8.9e-32 141.7 298 34.6
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 3.7e-30 136.3 311 34.4
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 1.6e-28 131.0 293 33.8
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.1e-28 130.6 409 29.6
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 4.6e-28 129.4 221 42.1
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 7.8e-28 128.6 330 31.5
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 2.3e-24 117.1 290 29.3
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 3.4e-23 113.2 197 40.1
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 9.2e-21 105.1 258 28.3
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 2.1e-20 104.0 215 33.5
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 2.7e-20 103.6 136 41.2
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 4.6e-20 102.8 354 28.0
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.3e-19 101.3 140 44.3
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 2.3e-19 100.5 195 34.9
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 3.0e-19 100.1 89 55.1
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 6.6e-19 99.0 214 31.8
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 5.6e-18 95.9 85 51.8
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 4.7e-17 92.8 148 36.5
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 2.4e-16 90.5 100 45.0
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 3.1e-16 90.1 101 45.5
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.6e-15 87.0 341 25.8
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 4.4e-15 86.3 119 42.0
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 7.6e-15 85.5 235 30.6
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.9e-14 83.6 202 37.1
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.9e-14 82.8 55 70.9
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 4.2e-13 79.7 326 26.7
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 2.7e-12 77.0 70 51.4
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.7e-12 77.0 230 34.3
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 4.6e-12 76.3 307 24.8
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 5.1e-11 72.8 133 37.6
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 6.2e-09 65.9 175 34.3
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.4e-08 64.7 258 27.1
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 3.8e-06 56.6 75 41.3
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 3.8e-06 56.6 298 22.1


User provided reference genes

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