Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 5.6e-113 411.0 212 100.0
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 7.1e-108 394.0 212 94.8
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 1.6e-99 366.3 212 89.6
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 2.1e-91 339.3 212 81.1
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 4.6e-91 338.2 207 83.6
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 1.3e-90 336.7 212 81.6
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 1.6e-88 329.7 202 83.7
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 1.6e-88 329.7 212 79.7
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 8.1e-88 327.4 212 79.7
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 9.0e-87 323.9 209 77.0
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 9.9e-86 320.5 207 73.9
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 1.2e-83 313.5 207 71.5
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 6.0e-83 311.2 212 70.3
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 3.0e-82 308.9 208 69.7
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 3.9e-82 308.5 211 76.3
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 5.1e-82 308.1 210 73.3
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 5.1e-82 308.1 210 73.3
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 6.6e-82 307.8 210 71.0
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 9.6e-81 303.9 211 75.4
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 9.6e-81 303.9 210 73.8
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 2.8e-80 302.4 209 69.9
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 3.6e-80 302.0 207 68.6
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 3.6e-80 302.0 207 72.9
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 3.6e-80 302.0 210 72.4
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 8.1e-80 300.8 210 73.3
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 8.1e-80 300.8 207 73.4
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 8.1e-80 300.8 207 70.5
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 1.1e-79 300.4 210 72.9
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.4e-79 299.3 210 72.4
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 1.2e-78 297.0 207 71.5
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 2.0e-78 296.2 209 71.8
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.6e-78 295.8 207 68.1
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 2.6e-78 295.8 210 71.4
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 3.4e-78 295.4 209 69.9
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 4.5e-78 295.0 207 72.0
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 4.5e-78 295.0 209 71.8
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 5.8e-78 294.7 210 71.9
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 7.6e-78 294.3 210 71.4
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 7.6e-78 294.3 210 71.9
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 9.9e-78 293.9 207 67.6
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 9.9e-78 293.9 207 72.5
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 9.9e-78 293.9 210 71.9
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.2e-77 292.7 210 71.0
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 1.9e-76 289.7 210 66.7
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 2.4e-76 289.3 187 72.2
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 5.4e-76 288.1 210 69.0
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 5.4e-76 288.1 210 70.0
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 5.4e-76 288.1 210 70.0
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 7.1e-76 287.7 210 69.5
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 7.1e-76 287.7 209 64.1
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 1.2e-75 287.0 210 69.5
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 2.1e-75 286.2 210 69.0
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 2.1e-75 286.2 207 68.1
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 2.7e-75 285.8 210 69.5
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 2.7e-75 285.8 209 66.0
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 7.9e-75 284.3 210 71.0
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 1.8e-74 283.1 207 69.1
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 3.0e-74 282.3 219 66.7
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 5.1e-74 281.6 210 68.6
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 5.1e-74 281.6 207 69.1
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 8.7e-74 280.8 261 55.6
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.5e-73 280.0 207 68.6
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 1.9e-73 279.6 207 65.7
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 1.9e-73 279.6 210 67.1
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 3.3e-73 278.9 215 61.4
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 4.8e-72 275.0 207 66.2
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 4.8e-72 275.0 210 66.7
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 4.8e-72 275.0 208 66.8
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 4.8e-72 275.0 206 68.9
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 3.1e-71 272.3 210 66.2
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 3.1e-71 272.3 207 64.3
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 4.0e-71 271.9 207 66.7
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 6.9e-71 271.2 207 66.7
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 6.9e-71 271.2 207 66.7
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 1.2e-70 270.4 210 65.7
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 1.2e-70 270.4 207 68.1
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 2.6e-70 269.2 210 65.7
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 2.6e-70 269.2 210 65.7
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 3.4e-70 268.9 210 65.2
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 7.6e-70 267.7 209 61.2
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 1.0e-69 267.3 190 71.1
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 1.3e-69 266.9 210 64.8
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 1.3e-69 266.9 207 65.7
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 2.2e-69 266.2 210 64.8
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 2.2e-69 266.2 210 64.8
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 2.2e-69 266.2 204 65.7
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 2.9e-69 265.8 204 66.2
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 3.8e-69 265.4 175 70.9
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 3.8e-69 265.4 204 65.2
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 3.8e-69 265.4 204 65.2
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 8.4e-69 264.2 210 63.8
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 1.4e-68 263.5 207 64.3
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 1.9e-68 263.1 206 63.6
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 2.5e-68 262.7 207 64.3
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 2.5e-68 262.7 210 62.9
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 3.2e-68 262.3 208 63.0
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 4.2e-68 261.9 207 64.7
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 4.6e-67 258.5 207 64.3
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 3.9e-66 255.4 207 62.8
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.1e-65 253.8 198 65.7
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 1.9e-65 253.1 210 61.9
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 2.5e-65 252.7 184 68.5
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 7.4e-65 251.1 207 59.9
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.4e-63 246.9 210 59.5
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 5.3e-63 245.0 209 56.9
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 3.4e-62 242.3 204 57.4
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 4.5e-62 241.9 210 59.0
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 5.8e-62 241.5 207 59.9
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 2.2e-61 239.6 208 57.2
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 6.7e-50 201.4 174 58.0
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 3.3e-49 199.1 209 47.4
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 4.8e-48 195.3 203 49.3
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 1.1e-47 194.1 207 53.6
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 1.4e-42 177.2 210 47.6
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 1.5e-41 173.7 135 57.0
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 1.2e-38 164.1 209 46.4
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 8.8e-34 147.9 156 45.5
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 2.4e-31 139.8 96 71.9
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 7.2e-20 101.7 64 75.0
Medtr5g016930 Medicago truncatula HOM05D006615 ORTHO05D007999 6.8e-18 95.1 55 83.6
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.5e-17 94.0 81 56.8
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 8.3e-16 88.2 86 55.8
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 3.8e-13 79.3 93 46.2
Actinidia25444 Actinidia chinensis HOM05D001219 ORTHO05D001017 2.2e-08 63.5 79 40.5
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 8.3e-08 61.6 99 33.3
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.3e-08 61.6 116 32.8
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 8.3e-08 61.6 217 24.0
Sc03g0001840 Simmondsia chinensis HOM05D001905 ORTHO05D001820 8.3e-08 61.6 162 30.2
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-07 61.2 115 32.2
Medtr1g023530 Medicago truncatula HOM05D001219 ORTHO05D001017 1.8e-07 60.5 110 29.1
FAN19G1902 Fragaria x ananassa HOM05D000710 ORTHO05D000336 2.4e-07 60.1 218 24.3
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 3.2e-07 59.7 206 27.2
AUR62016289 Chenopodium quinoa HOM05D001219 ORTHO05D001017 9.2e-07 58.2 65 43.1
Thhalv10023830m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 9.2e-07 58.2 212 27.4
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 1.2e-06 57.8 88 34.1
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 1.2e-06 57.8 115 32.2
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.2e-06 57.8 115 32.2
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 1.6e-06 57.4 52 53.8
AUR62011479 Chenopodium quinoa HOM05D001219 ORTHO05D001017 2.0e-06 57.0 91 36.3
COL.COLO4_11476 Corchorus olitorius HOM05D001905 ORTHO05D001820 2.0e-06 57.0 150 29.3
Thhalv10009631m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 2.0e-06 57.0 207 27.1
Manes.04G105600 Manihot esculenta HOM05D001219 ORTHO05D001017 2.0e-06 57.0 89 32.6
FAN27G2375 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.7e-06 56.6 192 27.1
TPR.G29931 Trifolium pratense HOM05D001219 ORTHO05D001017 2.7e-06 56.6 113 29.2
unitig_899.g15441 Utricularia gibba HOM05D001818 ORTHO05D001780 2.7e-06 56.6 93 39.8
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 4.6e-06 55.8 165 27.3
Psat3g054200 Pisum sativum HOM05D001219 ORTHO05D001017 4.6e-06 55.8 130 30.0
Thhalv10029272m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 5.9e-06 55.5 213 24.4
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 5.9e-06 55.5 58 39.7
Duzib264G1203 Durio zibethinus HOM05D001905 ORTHO05D001820 7.8e-06 55.1 150 30.0
FAN02G1796 Fragaria x ananassa HOM05D001219 ORTHO05D001017 7.8e-06 55.1 80 33.8
Phvul.010G159100 Phaseolus vulgaris HOM05D001219 ORTHO05D001017 7.8e-06 55.1 130 26.2
RcHm_v2.0_Chr2g0103761 Rosa chinensis HOM05D000710 ORTHO05D000336 7.8e-06 55.1 209 24.9
Sed0020917 Sechium edule HOM05D001905 ORTHO05D001820 7.8e-06 55.1 158 30.4
TPR.G9967 Trifolium pratense HOM05D001219 ORTHO05D001017 7.8e-06 55.1 94 33.0


User provided reference genes

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