Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1529.6 754 100.0
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1390.2 760 91.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1299.6 767 85.9
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1275.4 758 83.9
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1256.5 759 81.9
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1256.1 757 82.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1252.7 753 82.6
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1246.9 758 82.3
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1241.5 759 81.0
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1237.2 759 81.6
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1147.5 666 86.5
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1098.2 759 72.7
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 754 71.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1091.3 759 72.2
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1087.4 764 72.5
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1086.6 757 70.9
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 759 71.8
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 759 71.8
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 760 71.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 5.2e-312 1073.5 759 71.4
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 2.3e-310 1068.5 759 69.8
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 3.0e-310 1068.1 761 70.4
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.9e-309 1065.4 758 70.1
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.8e-308 1061.6 756 72.9
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.7e-308 1061.2 758 69.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.8e-308 1060.8 758 71.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.1e-307 1059.7 758 70.3
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.8e-307 1058.9 758 70.2
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 4.0e-307 1057.7 756 72.8
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 9.9e-306 1053.1 759 70.4
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.6e-303 1045.8 758 69.0
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.7e-303 1045.0 759 70.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.0e-302 1041.6 759 70.0
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.9e-302 1041.2 757 69.6
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.3e-301 1038.1 784 66.7
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.1e-300 1035.4 784 66.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 4.8e-300 1034.2 783 66.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.6e-298 1028.5 759 68.8
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.7e-297 1025.8 757 68.7
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 2.9e-297 1025.0 737 68.1
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.5e-296 1021.9 777 67.3
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.0e-294 1016.5 783 66.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 783 66.8
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 758 68.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.9e-293 1012.3 793 65.8
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.6e-292 1009.2 791 65.4
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.8e-292 1007.7 757 67.4
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 2.4e-291 1005.4 805 64.3
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 770 66.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.0e-289 1000.0 780 65.8
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 1.9e-288 995.7 778 65.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 3.2e-288 995.0 781 64.9
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 2.3e-286 988.8 767 65.1
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 3.0e-286 988.4 758 66.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 6.7e-286 987.3 727 69.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-285 986.5 758 67.0
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 4.3e-285 984.6 785 64.7
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 9.7e-285 983.4 781 63.9
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 2.8e-284 981.9 779 64.2
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 6.3e-284 980.7 778 64.4
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.8e-283 979.2 758 66.0
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 5.3e-283 977.6 778 63.9
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 1.5e-282 976.1 779 63.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.5e-282 974.5 776 63.8
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 8.5e-281 970.3 778 63.2
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 5.5e-280 967.6 781 63.6
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 3.6e-279 964.9 777 62.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 4.7e-279 964.5 775 63.7
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 8.8e-278 960.3 775 62.6
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.5e-277 959.5 775 62.6
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 4.4e-277 958.0 737 65.4
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 2.2e-276 955.7 756 63.9
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.2e-276 955.7 757 63.9
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 2.8e-276 955.3 756 63.8
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 6.3e-276 954.1 756 63.6
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.4e-275 952.2 782 62.4
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.1e-275 951.8 737 65.0
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 7.0e-275 950.7 776 63.0
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 9.1e-275 950.3 755 63.7
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.2e-274 949.9 737 64.9
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.2e-274 949.9 737 64.9
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.2e-274 949.9 782 63.0
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.0e-274 949.1 737 64.7
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.2e-273 945.7 716 66.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.2e-273 945.7 734 63.8
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 8.5e-273 943.7 755 63.0
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.4e-272 943.0 756 62.8
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 4.2e-272 941.4 711 65.7
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 6.1e-271 937.6 755 62.6
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.4e-270 936.4 774 61.1
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.1e-269 933.3 754 62.2
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.1e-269 933.3 779 62.6
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 4.4e-269 931.4 784 59.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.3e-268 929.9 740 62.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.2e-268 929.1 769 62.3
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 3.1e-267 925.2 742 62.7
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.3e-267 924.5 735 63.8
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 7.0e-267 924.1 739 62.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 6.5e-265 917.5 740 62.4
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.5e-264 916.4 758 61.6
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.9e-264 916.0 772 62.3
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 5.5e-264 914.4 778 60.9
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.2e-263 913.3 758 63.5
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.6e-263 912.9 739 61.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.8e-262 909.4 769 59.6
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.3e-262 909.1 840 58.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 4.0e-262 908.3 783 60.3
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.2e-262 907.9 741 61.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 5.2e-262 907.9 778 60.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 6.7e-262 907.5 740 60.9
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.2e-261 906.7 813 59.7
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-261 906.0 774 60.2
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.1e-259 900.2 771 59.9
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-258 896.7 789 60.1
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.6e-258 896.3 781 58.3
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 2.0e-258 896.0 741 61.0
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.2e-257 892.5 768 58.6
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.5e-256 889.8 824 56.9
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 4.2e-256 888.3 789 59.4
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.5e-256 887.9 737 62.0
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.6e-255 886.3 740 60.7
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.4e-251 873.2 741 60.6
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.2e-250 870.2 768 57.8
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.5e-250 868.6 741 59.6
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-249 866.3 762 57.7
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.1e-248 863.6 719 61.8
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.1e-248 863.6 705 62.6
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 6.8e-246 854.4 736 59.6
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 6.3e-244 847.8 742 59.3
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.1e-243 847.0 767 58.8
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 3.1e-243 845.5 728 59.8
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.1e-235 820.5 726 61.3
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.0e-235 817.8 728 58.4
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.2e-229 800.4 775 54.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.6e-229 799.3 785 55.0
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 4.9e-228 795.0 681 60.9
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 3.6e-223 778.9 770 54.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.4e-203 713.8 704 54.4
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.1e-179 634.4 768 45.2
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 4.2e-179 632.5 721 45.9
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 6.9e-174 615.1 743 45.8
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.0e-172 611.3 771 44.7
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.0e-168 597.0 734 44.6
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 9.7e-168 594.7 419 68.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.1e-166 591.3 756 45.9
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.6e-157 560.1 736 43.1
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 8.8e-153 545.0 425 66.8
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 7.5e-144 515.4 392 64.0
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-142 510.8 387 62.8
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-142 510.8 387 62.8
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 4.1e-134 483.0 276 80.8
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.1e-130 470.7 585 45.1
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.7e-117 427.2 420 55.5
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.0e-116 422.9 253 77.9
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-108 397.9 451 48.3
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 2.4e-97 360.9 747 34.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.6e-75 286.6 286 54.9
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 3.4e-64 250.8 752 28.3
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.7e-55 221.9 242 48.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 6.5e-47 193.4 199 52.8
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.7e-42 177.6 142 62.7
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.4e-38 162.9 82 82.9
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.4e-33 149.1 149 57.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.2e-29 136.0 65 86.2
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.0e-24 118.6 135 48.1
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.6e-21 107.8 134 45.5
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 7.3e-14 83.6 103 42.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.2e-11 76.3 108 43.5
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 9.8e-11 73.2 77 51.9
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.8e-09 68.9 101 40.6
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 5.4e-09 67.4 88 43.2


User provided reference genes

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