Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 4.6e-95 351.3 188 100.0
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 9.1e-67 257.3 132 92.4
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.3e-60 236.9 132 83.3
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 6.3e-60 234.6 131 85.5
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.1e-59 233.8 132 82.6
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 7.0e-59 231.1 131 83.2
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.0e-57 227.3 131 83.2
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 1.7e-57 226.5 131 82.4
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 7.3e-56 221.1 132 79.5
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 7.3e-56 221.1 132 79.5
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 9.5e-56 220.7 126 81.7
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 9.5e-56 220.7 126 81.7
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 4.4e-53 211.8 133 75.2
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.4e-53 211.8 133 75.2
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.4e-53 211.8 133 75.2
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 5.7e-53 211.5 132 72.7
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 5.7e-53 211.5 131 74.0
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 7.5e-53 211.1 107 94.4
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.3e-52 210.3 132 74.2
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.3e-52 210.3 125 77.6
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.7e-52 209.9 133 75.2
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.7e-52 208.8 132 75.0
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 3.7e-52 208.8 132 71.2
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 3.7e-52 208.8 131 73.3
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 4.9e-52 208.4 132 75.8
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 6.4e-52 208.0 133 73.7
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 8.3e-52 207.6 132 72.7
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 8.3e-52 207.6 131 74.0
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 8.3e-52 207.6 132 73.5
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.8e-51 206.5 130 73.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.8e-51 206.5 130 73.8
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.1e-51 205.3 130 73.1
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 5.4e-51 204.9 131 74.0
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 7.0e-51 204.5 131 71.0
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.2e-50 203.8 132 72.0
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 3.5e-50 202.2 131 71.8
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.6e-50 201.8 125 75.2
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 5.9e-50 201.4 131 71.8
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 5.9e-50 201.4 126 71.4
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 3.9e-49 198.7 131 71.0
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.9e-49 198.7 132 69.7
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 5.0e-49 198.4 132 68.2
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 5.0e-49 198.4 125 72.8
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 5.0e-49 198.4 130 72.3
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 6.6e-49 198.0 132 71.2
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 6.6e-49 198.0 132 70.5
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.6e-49 198.0 132 69.7
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 8.6e-49 197.6 132 69.7
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.1e-48 197.2 132 69.7
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.1e-48 197.2 132 67.4
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 1.1e-48 197.2 125 73.6
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-48 196.8 132 68.9
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.5e-48 196.8 119 74.8
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.9e-48 196.4 132 69.7
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.9e-48 196.4 130 75.4
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.9e-48 196.4 132 68.9
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 1.9e-48 196.4 125 73.6
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.9e-48 196.4 125 73.6
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 2.5e-48 196.1 132 68.9
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 4.3e-48 195.3 163 62.0
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.3e-48 195.3 130 74.6
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 5.6e-48 194.9 132 68.9
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.2e-47 193.7 132 68.2
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.2e-47 193.7 132 68.2
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.2e-47 193.7 132 68.9
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.2e-47 193.7 132 68.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.2e-47 193.7 132 68.2
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.6e-47 193.4 132 68.9
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.6e-47 193.4 132 68.2
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.1e-47 193.0 132 68.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 2.1e-47 193.0 132 67.4
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.1e-47 193.0 132 65.9
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.1e-47 193.0 131 71.8
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.8e-47 192.6 132 67.4
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.8e-47 192.6 132 67.4
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.8e-47 192.6 131 70.2
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 3.6e-47 192.2 132 68.2
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 3.6e-47 192.2 130 70.0
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 4.7e-47 191.8 120 74.2
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 6.2e-47 191.4 132 68.2
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 6.2e-47 191.4 132 68.9
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 8.0e-47 191.0 131 67.9
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.1e-46 190.7 131 67.2
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.1e-46 190.7 132 67.4
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 1.4e-46 190.3 132 66.7
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.4e-46 190.3 131 71.8
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.3e-46 189.5 132 63.6
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.3e-46 189.5 132 68.2
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 3.1e-46 189.1 131 67.9
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 3.1e-46 189.1 132 72.7
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.2e-46 188.3 132 62.9
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 5.2e-46 188.3 126 68.3
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 8.9e-46 187.6 130 66.9
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.5e-45 186.8 133 66.9
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.5e-45 186.8 131 68.7
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.0e-45 186.4 131 67.9
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 7.5e-45 184.5 132 64.4
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 9.8e-45 184.1 131 67.2
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.7e-44 183.3 130 66.9
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 6.4e-44 181.4 133 66.2
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.1e-43 180.6 125 66.4
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-43 180.3 126 66.7
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 3.2e-43 179.1 131 65.6
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 3.2e-43 179.1 133 66.9
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.2e-42 177.2 130 64.6
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.2e-42 177.2 130 63.8
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.6e-42 176.8 125 64.8
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 2.0e-42 176.4 130 63.1
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 2.7e-42 176.0 132 62.1
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.5e-42 175.6 125 64.8
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.6e-42 175.3 131 66.4
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 5.0e-41 171.8 126 64.3
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 5.0e-41 171.8 133 60.9
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.9e-40 169.9 124 68.5
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 3.6e-39 165.6 135 59.3
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.1e-38 164.1 133 57.9
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.4e-38 163.7 126 61.9
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 4.0e-38 162.2 132 59.8
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.2e-37 160.6 229 40.2
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 9.9e-37 157.5 124 64.5
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 1.3e-36 157.1 133 61.7
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.3e-36 157.1 214 44.4
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.9e-32 143.3 109 66.1
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 4.7e-31 138.7 109 59.6
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.5e-29 133.7 132 56.1
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.2e-26 124.0 142 47.2
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 2.7e-26 122.9 132 49.2
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.3e-25 119.8 132 47.0
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 3.0e-25 119.4 80 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 8.6e-25 117.9 128 50.0
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 6.9e-22 108.2 61 83.6
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 3.4e-21 105.9 133 44.4
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 5.8e-21 105.1 60 83.3
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 6.4e-20 101.7 126 45.2
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-19 100.5 54 83.3
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 9.3e-19 97.8 60 78.3
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.0e-17 94.4 54 77.8
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 1.3e-15 87.4 52 76.9
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.3e-15 87.4 84 50.0
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 4.8e-15 85.5 174 32.2
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.1e-11 74.3 169 29.6
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 3.9e-09 65.9 106 34.0


User provided reference genes

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