Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2679 Trifolium pratense HOM05D006567 ORTHO05D412848 2.4e-134 482.3 262 100.0
TPR.G2689 Trifolium pratense HOM05D000935 ORTHO05D411615 1.5e-59 233.8 191 72.8
TPR.G2696 Trifolium pratense HOM05D006567 ORTHO05D411767 1.7e-42 177.2 101 91.1
TPR.G38542 Trifolium pratense HOM05D006567 ORTHO05D411937 1.1e-33 147.9 113 77.0
TPR.G40300 Trifolium pratense HOM05D006567 ORTHO05D412752 3.5e-24 116.3 62 93.5
TPR.G24425 Trifolium pratense HOM05D006567 ORTHO05D411483 6.0e-24 115.5 62 91.9
TPR.G26656 Trifolium pratense HOM05D006567 ORTHO05D412236 1.2e-16 91.3 63 76.2
Medtr4g100760 Medicago truncatula HOM05D006567 ORTHO05D009430 2.5e-14 83.6 54 75.9
TPR.G37608 Trifolium pratense HOM05D006567 ORTHO05D009430 9.6e-14 81.6 54 74.1
COL.COLO4_37145 Corchorus olitorius HOM05D006567 ORTHO05D009430 4.8e-13 79.3 54 70.4
CSS0024870 Camellia sinensis var. sinensis HOM05D006567 ORTHO05D009430 6.2e-13 79.0 61 65.6
Ca_21975_v3 Cicer arietinum L. HOM05D006567 ORTHO05D009430 6.2e-13 79.0 54 72.2
Lj4g0021343 Lotus japonicus HOM05D006567 ORTHO05D009430 6.2e-13 79.0 54 72.2
Lalb_Chr05g0221201 Lupinus albus HOM05D006567 ORTHO05D009430 8.1e-13 78.6 54 68.5
PGR031G0713 Punica granatum HOM05D006567 ORTHO05D009430 1.1e-12 78.2 54 72.2
arahy.Tifrunner.gnm1.ann1.69E4XE Arachis hypogaea HOM05D006567 ORTHO05D009430 1.4e-12 77.8 54 70.4
arahy.Tifrunner.gnm1.ann1.E0WBQ7 Arachis hypogaea HOM05D006567 ORTHO05D009430 1.4e-12 77.8 54 70.4
Glyma.05G061300 Glycine max HOM05D006567 ORTHO05D009430 1.4e-12 77.8 54 68.5
HanXRQChr13g0417851 Helianthus annuus HOM05D006567 ORTHO05D009430 1.4e-12 77.8 54 66.7
Psat4g072680 Pisum sativum HOM05D006567 ORTHO05D009430 1.4e-12 77.8 54 74.1
ECA240G4587 Erigeron canadensis HOM05D006567 ORTHO05D009430 1.8e-12 77.4 54 68.5
Lsat_1_v5_gn_6_92541 Lactuca sativa HOM05D006567 ORTHO05D009430 2.4e-12 77.0 54 68.5
MSTRG.12113 Avicennia marina HOM05D006567 ORTHO05D009430 4.0e-12 76.3 55 63.6
Gohir.D12G218600 Gossypium hirsutum HOM05D006567 ORTHO05D009430 4.0e-12 76.3 54 68.5
Gorai.008G234200 Gossypium raimondii HOM05D006567 ORTHO05D009430 4.0e-12 76.3 54 68.5
Gohir.A12G216000 Gossypium hirsutum HOM05D006567 ORTHO05D009430 5.3e-12 75.9 54 66.7
TWI81G0123 Tripterygium wilfordii HOM05D006567 ORTHO05D009430 5.3e-12 75.9 54 68.5
VMungo0251G1330 Vigna mungo HOM05D006567 ORTHO05D009430 5.3e-12 75.9 54 70.4
Duzib084G0744 Durio zibethinus HOM05D006567 ORTHO05D009430 6.9e-12 75.5 54 68.5
Phvul.003G221900 Phaseolus vulgaris HOM05D006567 ORTHO05D009430 6.9e-12 75.5 54 68.5
Rhsim09G0000200 Rhododendron simsii HOM05D006567 ORTHO05D009430 6.9e-12 75.5 61 62.3
Solyc08g078460.3 Solanum lycopersicum HOM05D006567 ORTHO05D009430 6.9e-12 75.5 54 66.7
vmacro00188 Vaccinium macrocarpon HOM05D006567 ORTHO05D009430 6.9e-12 75.5 61 62.3
Actinidia14413 Actinidia chinensis HOM05D006567 ORTHO05D009430 9.0e-12 75.1 61 63.9
Eucgr.D02095 Eucalyptus grandis HOM05D006567 ORTHO05D009430 1.2e-11 74.7 54 66.7
Ciclev10020637m.g Citrus clementina HOM05D006567 ORTHO05D009430 1.5e-11 74.3 54 64.8
PSO017G4082 Papaver somniferum HOM05D006567 ORTHO05D009430 1.5e-11 74.3 55 60.0
PGSC0003DMG400004822 Solanum tuberosum HOM05D006567 ORTHO05D009430 1.5e-11 74.3 54 64.8
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 2.0e-11 73.9 54 66.7
CANSAT21G0369 Cannabis sativa HOM05D006567 ORTHO05D009430 2.6e-11 73.6 54 66.7
CAN.G1178.26 Capsicum annuum HOM05D006567 ORTHO05D009430 2.6e-11 73.6 54 64.8
Zm00001eb416490 Zea mays HOM05D006567 ORTHO05D009430 2.6e-11 73.6 58 60.3
MD04G1062400 Malus domestica HOM05D006567 ORTHO05D009430 3.4e-11 73.2 54 66.7
Manes.01G082300 Manihot esculenta HOM05D006567 ORTHO05D009430 3.4e-11 73.2 54 68.5
Nitab4.5_0001381g0120 Nicotiana tabacum HOM05D006567 ORTHO05D009430 3.4e-11 73.2 54 63.0
Sopen08g026950 Solanum pennellii HOM05D006567 ORTHO05D009430 3.4e-11 73.2 54 64.8
DCAR_004966 Daucus carota HOM05D006567 ORTHO05D009430 4.4e-11 72.8 54 63.0
PSO170G1323 Papaver somniferum HOM05D006567 ORTHO05D009430 4.4e-11 72.8 54 61.1
Prupe.5G066000 Prunus persica HOM05D006567 ORTHO05D009430 4.4e-11 72.8 54 66.7
Sed0022818 Sechium edule HOM05D006567 ORTHO05D009430 4.4e-11 72.8 54 64.8
TAR636G1533 Trochodendron aralioides HOM05D006567 ORTHO05D009430 4.4e-11 72.8 54 66.7
unitig_899.g15594 Utricularia gibba HOM05D006567 ORTHO05D009430 4.4e-11 72.8 54 63.0
Aqoxy7G00822 Aquilegia oxysepala HOM05D006567 ORTHO05D009430 5.8e-11 72.4 54 63.0
Dinv39160 Davidia involucrata HOM05D006567 ORTHO05D009430 5.8e-11 72.4 54 63.0
Hund11604 Selenicereus undatus HOM05D006567 ORTHO05D009430 5.8e-11 72.4 61 59.0
EL10Ac5g12369 Beta vulgaris HOM05D006567 ORTHO05D009430 7.6e-11 72.0 54 63.0
EL10Ac5g12374 Beta vulgaris HOM05D006567 ORTHO05D009430 7.6e-11 72.0 54 63.0
CiPaw.11G081200 Carya illinoinensis HOM05D006567 ORTHO05D009430 7.6e-11 72.0 54 66.7
AUR62007104 Chenopodium quinoa HOM05D006567 ORTHO05D009430 7.6e-11 72.0 54 64.8
AUR62019967 Chenopodium quinoa HOM05D006567 ORTHO05D009430 7.6e-11 72.0 54 64.8
Nitab4.5_0002289g0070 Nicotiana tabacum HOM05D006567 ORTHO05D009430 7.6e-11 72.0 54 63.0
RcHm_v2.0_Chr7g0203711 Rosa chinensis HOM05D006567 ORTHO05D009430 7.6e-11 72.0 54 64.8
Atru.chr9.1289 Acer truncatum HOM05D006567 ORTHO05D009430 9.9e-11 71.6 54 61.1
Cpa.g.sc29.179 Carica papaya HOM05D006567 ORTHO05D009430 9.9e-11 71.6 54 64.8
Cc08_g12240 Coffea canephora HOM05D006567 ORTHO05D009430 9.9e-11 71.6 54 64.8
MELO3C005521.2 Cucumis melo HOM05D006567 ORTHO05D009430 9.9e-11 71.6 54 64.8
QL12p011664 Quercus lobata HOM05D006567 ORTHO05D009430 9.9e-11 71.6 54 64.8
Haze_00669 Corylus avellana HOM05D006567 ORTHO05D009430 1.3e-10 71.2 54 64.8
CsaV3_5G004320 Cucumis sativus L. HOM05D006567 ORTHO05D009430 1.3e-10 71.2 54 64.8
Migut.A01121 Erythranthe guttata HOM05D006567 ORTHO05D009430 1.3e-10 71.2 54 63.0
Nn1g00949 Nelumbo nucifera HOM05D006567 ORTHO05D009430 1.3e-10 71.2 54 64.8
Peaxi162Scf00209g00122 Petunia axillaris HOM05D006567 ORTHO05D009430 1.3e-10 71.2 54 63.0
Sabra03G0048700 Salix brachista HOM05D006567 ORTHO05D009430 1.3e-10 71.2 54 64.8
Sc07g0009260 Simmondsia chinensis HOM05D006567 ORTHO05D009430 1.3e-10 71.2 54 64.8
Thecc.03G249000 Theobroma cacao HOM05D006567 ORTHO05D009430 1.7e-10 70.9 54 64.8
Potri.003G078500 Populus trichocarpa HOM05D006567 ORTHO05D009430 2.2e-10 70.5 54 63.0
SGA_v2.0_scaffold26G11306 Striga asiatica HOM05D006567 ORTHO05D009430 2.2e-10 70.5 54 61.1
Os08g0148267 Oryza sativa ssp. japonica HOM05D006567 ORTHO05D009430 2.9e-10 70.1 54 63.0
SalBow6G6157 Salvia bowleyana HOM05D006567 ORTHO05D009430 2.9e-10 70.1 54 59.3
Cfa015824 Carpinus fangiana HOM05D006567 ORTHO05D009430 3.8e-10 69.7 54 63.0
Mapoly0040s0044 Marchantia polymorpha HOM05D006567 ORTHO05D009430 3.8e-10 69.7 54 59.3
HPP92_025881 Vanilla planifolia HOM05D006567 ORTHO05D009430 3.8e-10 69.7 54 61.1
Aa31LG1G23140 Aethionema arabicum HOM05D006567 ORTHO05D009430 4.9e-10 69.3 54 61.1
AL7G37340 Arabidopsis lyrata HOM05D006567 ORTHO05D009430 4.9e-10 69.3 54 61.1
AT4G17370 Arabidopsis thaliana HOM05D006567 ORTHO05D009430 4.9e-10 69.3 54 61.1
Thhalv10025513m.g Eutrema salsugineum HOM05D006567 ORTHO05D009430 4.9e-10 69.3 54 61.1
FvH4_5g19170 Fragaria vesca HOM05D006567 ORTHO05D009430 4.9e-10 69.3 54 59.3
Sp7g16810 Schrenkiella parvula HOM05D006567 ORTHO05D009430 4.9e-10 69.3 54 61.1
CARHR223980 Cardamine hirsuta HOM05D006567 ORTHO05D009430 6.4e-10 68.9 54 59.3
Glyma.17G143100 Glycine max HOM05D006567 ORTHO05D009430 6.4e-10 68.9 54 63.0
Carub.0007s2404 Capsella rubella HOM05D006567 ORTHO05D009430 8.4e-10 68.6 54 61.1
FAN04G2727 Fragaria x ananassa HOM05D006567 ORTHO05D009430 8.4e-10 68.6 54 59.3
FAN08G1209 Fragaria x ananassa HOM05D006567 ORTHO05D009430 8.4e-10 68.6 54 59.3
MBI04_g09522_MAGBIO Magnolia biondii HOM05D006567 ORTHO05D009430 8.4e-10 68.6 51 60.8
THA.LOC104806666 Tarenaya hassleriana HOM05D006567 ORTHO05D009430 1.1e-09 68.2 54 61.1
FAN18G0654 Fragaria x ananassa HOM05D006567 ORTHO05D009430 2.4e-09 67.0 54 57.4
SEGI_34288 Sequoiadendron giganteum HOM05D006567 ORTHO05D009430 2.4e-09 67.0 54 63.0
ClCG01G004160 Citrullus lanatus HOM05D006567 ORTHO05D009430 4.2e-09 66.2 55 60.0
BcaNung03466 Brassica carinata HOM05D006567 ORTHO05D009430 5.4e-09 65.9 54 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3639 Anthoceros agrestis HOM05D006567 ORTHO05D009430 7.1e-09 65.5 54 57.4
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 7.1e-09 65.5 54 59.3
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 7.1e-09 65.5 54 59.3
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 7.1e-09 65.5 54 59.3
SMO228G0171 Selaginella moellendorffii HOM05D006567 ORTHO05D009430 7.1e-09 65.5 55 52.7
ATR0057G105 Amborella trichopoda HOM05D006567 ORTHO05D009430 1.6e-08 64.3 54 53.7
Lj2C221T14 Lonicera japonica HOM05D006567 ORTHO05D009430 2.1e-08 63.9 44 70.5
Pp3c4_15440 Physcomitrium patens HOM05D006567 ORTHO05D009430 7.8e-08 62.0 54 51.9


User provided reference genes

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