Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 3.0e-128 461.8 232 100.0
TPR.G708 Trifolium pratense HOM05D009488 ORTHO05D011222 3.4e-63 245.7 124 96.0
TPR.G20426 Trifolium pratense HOM05D009488 ORTHO05D011222 1.5e-55 220.3 144 74.3
TPR.G35321 Trifolium pratense HOM05D009488 ORTHO05D011222 3.2e-53 212.6 144 72.9
TPR.G28536 Trifolium pratense HOM05D009488 ORTHO05D011222 1.7e-51 206.8 124 80.6
TPR.G14044 Trifolium pratense HOM05D009488 ORTHO05D011222 3.1e-48 196.1 124 75.8
TPR.G36440 Trifolium pratense HOM05D009488 ORTHO05D011222 2.6e-47 193.0 124 75.0
TPR.G29704 Trifolium pratense HOM05D009488 ORTHO05D011222 5.8e-47 191.8 144 68.1
TPR.G7322 Trifolium pratense HOM05D009488 ORTHO05D011222 3.8e-46 189.1 126 73.8
TPR.G485 Trifolium pratense HOM05D009488 ORTHO05D011222 1.0e-43 181.0 144 66.0
TPR.G23242 Trifolium pratense HOM05D009488 ORTHO05D011222 1.5e-42 177.2 112 76.8
TPR.G29351 Trifolium pratense HOM05D009488 ORTHO05D011222 9.0e-40 167.9 145 63.4
TPR.G23240 Trifolium pratense HOM05D009488 ORTHO05D011222 1.8e-35 153.7 124 63.7
TPR.G24434 Trifolium pratense HOM05D009488 ORTHO05D011222 5.1e-35 152.1 81 87.7
Medtr6g033455 Medicago truncatula HOM05D009488 ORTHO05D011222 4.8e-33 145.6 124 60.5
Medtr3g030260 Medicago truncatula HOM05D009488 ORTHO05D011222 6.2e-33 145.2 124 57.3
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 4.0e-32 142.5 100 78.0
TPR.G4951 Trifolium pratense HOM05D000025 ORTHO05D000040 5.3e-32 142.1 143 55.2
TPR.G32032 Trifolium pratense HOM05D009488 ORTHO05D011222 1.2e-31 141.0 96 70.8
TPR.G31905 Trifolium pratense HOM05D009488 ORTHO05D011222 1.5e-31 140.6 124 58.9
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 2.0e-31 140.2 101 76.2
Medtr2g009950 Medicago truncatula HOM05D009488 ORTHO05D011222 4.5e-31 139.0 121 56.2
Medtr0012s0290 Medicago truncatula HOM05D000005 ORTHO05D000012 6.5e-30 135.2 108 63.9
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.9e-29 133.7 105 73.3
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.2e-28 131.0 104 71.2
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 1.3e-25 120.9 108 63.0
Medtr7g074720 Medicago truncatula HOM05D009488 ORTHO05D011222 2.6e-23 113.2 74 71.6
Medtr8g461570 Medicago truncatula HOM05D009488 ORTHO05D011222 2.6e-23 113.2 79 68.4
Medtr7g045350 Medicago truncatula HOM05D009488 ORTHO05D011222 1.6e-20 104.0 75 65.3
Medtr0510s0010 Medicago truncatula HOM05D009488 ORTHO05D011222 4.6e-20 102.4 76 67.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 7.9e-20 101.7 103 60.2
TPR.G40667 Trifolium pratense HOM05D009488 ORTHO05D011222 5.7e-18 95.5 69 69.6
TPR.G4083 Trifolium pratense HOM05D009488 ORTHO05D011222 1.7e-17 94.0 69 60.9
TPR.G15155 Trifolium pratense HOM05D000014 ORTHO05D011222 2.8e-17 93.2 57 68.4
TPR.G3663 Trifolium pratense HOM05D009488 ORTHO05D011222 1.4e-16 90.9 57 68.4
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 3.1e-16 89.7 81 60.5
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 6.9e-16 88.6 104 51.0
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.2e-15 87.8 108 51.9
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 4.5e-15 85.9 110 51.8
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 7.7e-15 85.1 100 53.0
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 7.7e-15 85.1 103 52.4
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.0e-14 84.7 110 50.9
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.0e-14 84.7 103 53.4
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.3e-14 84.3 103 52.4
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.7e-14 84.0 111 49.5
Medtr7g016020 Medicago truncatula HOM05D008332 ORTHO05D010135 1.7e-14 84.0 89 48.3
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 2.9e-14 83.2 79 58.2
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 5.0e-14 82.4 101 48.5
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 5.0e-14 82.4 112 49.1
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 5.0e-14 82.4 104 50.0
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 6.5e-14 82.0 112 50.9
Medtr2g083020 Medicago truncatula HOM05D008332 ORTHO05D010135 1.9e-13 80.5 91 45.1
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.9e-13 80.5 96 55.2
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 3.2e-13 79.7 108 46.3
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.2e-13 79.7 107 49.5
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 3.2e-13 79.7 42 85.7
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 4.2e-13 79.3 105 50.5
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.2e-13 79.3 105 50.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 4.2e-13 79.3 114 44.7
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 5.5e-13 79.0 50 74.0
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 7.2e-13 78.6 93 49.5
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 9.4e-13 78.2 51 74.5
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.2e-12 77.8 94 47.9
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.2e-12 77.8 83 55.4
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.6e-12 77.4 48 77.1
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.6e-12 77.4 48 77.1
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.6e-12 77.4 48 77.1
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.6e-12 77.4 48 77.1
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.6e-12 77.4 74 58.1
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.6e-12 77.4 42 83.3
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.6e-12 77.4 42 83.3
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.6e-12 77.4 109 45.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 2.1e-12 77.0 98 51.0
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 2.1e-12 77.0 90 51.1
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 2.7e-12 76.6 80 51.2
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 3.6e-12 76.3 100 46.0
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 3.6e-12 76.3 88 56.8
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 3.6e-12 76.3 62 62.9
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 4.7e-12 75.9 80 56.2
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 4.7e-12 75.9 42 81.0
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 6.1e-12 75.5 107 44.9
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 7.9e-12 75.1 98 48.0
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.0e-11 74.7 48 75.0
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.0e-11 74.7 94 44.7
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.4e-11 74.3 87 52.9
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 1.4e-11 74.3 111 46.8
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.8e-11 73.9 102 47.1
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 1.8e-11 73.9 94 46.8
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 2.3e-11 73.6 92 48.9
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.3e-11 73.6 69 56.5
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 3.0e-11 73.2 118 40.7
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 3.9e-11 72.8 93 48.4
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 5.1e-11 72.4 114 44.7
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 5.1e-11 72.4 40 80.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 5.1e-11 72.4 90 45.6
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 5.1e-11 72.4 107 45.8
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.1e-11 72.4 75 52.0
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 6.7e-11 72.0 91 49.5
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 6.7e-11 72.0 43 76.7
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 8.8e-11 71.6 87 47.1
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 8.8e-11 71.6 106 45.3
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 8.8e-11 71.6 41 78.0
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 1.1e-10 71.2 57 61.4
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.1e-10 71.2 107 44.9
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 1.1e-10 71.2 41 82.9
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.1e-10 71.2 109 45.0
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.1e-10 71.2 108 41.7
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.1e-10 71.2 51 72.5
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.5e-10 70.9 80 52.5
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.0e-10 70.5 74 54.1
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 3.3e-10 69.7 47 72.3
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 4.4e-10 69.3 118 39.8
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 4.4e-10 69.3 89 53.9
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 4.4e-10 69.3 112 40.2
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 5.7e-10 68.9 98 49.0
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 7.4e-10 68.6 99 43.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 9.7e-10 68.2 39 84.6
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 9.7e-10 68.2 100 43.0
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-09 67.8 61 57.4
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 2.2e-09 67.0 51 64.7
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.2e-09 67.0 62 51.6
Medtr0718s0010 Medicago truncatula HOM05D012401 ORTHO05D014590 2.8e-09 66.6 56 55.4
Medtr3g080710 Medicago truncatula HOM05D012401 ORTHO05D014590 4.8e-09 65.9 56 55.4
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 3.1e-08 63.2 41 70.7
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 3.1e-08 63.2 41 70.7
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 3.1e-08 63.2 53 52.8
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 5.3e-08 62.4 113 37.2
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 5.3e-08 62.4 113 37.2
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 1.2e-07 61.2 39 69.2
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.5e-07 60.8 39 69.2
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.0e-07 60.5 109 38.5
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 3.4e-07 59.7 78 39.7
Medtr3g437350 Medicago truncatula HOM05D012401 ORTHO05D014590 5.9e-07 58.9 48 56.2
Medtr3g026190 Medicago truncatula HOM05D000572 ORTHO05D002399 1.3e-06 57.8 58 55.2
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 6.5e-06 55.5 41 56.1


User provided reference genes

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