Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 3.3e-121 438.3 215 100.0
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 5.6e-52 208.4 121 87.6
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 2.3e-50 203.0 121 83.5
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.0e-50 202.2 121 83.5
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 5.8e-49 198.4 121 81.8
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 7.5e-49 198.0 121 81.0
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 2.9e-48 196.1 121 80.2
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 4.9e-48 195.3 119 80.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.1e-47 194.1 111 83.8
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 7.8e-46 188.0 111 82.0
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.0e-45 187.6 121 76.9
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.0e-45 187.6 119 77.3
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.7e-45 186.8 121 76.0
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.7e-45 186.8 111 80.2
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.7e-45 186.8 115 79.1
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 5.0e-45 185.3 115 77.4
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 6.6e-45 184.9 111 82.0
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 6.6e-45 184.9 119 75.6
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.5e-44 183.0 111 80.2
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.3e-44 182.6 115 76.5
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 3.3e-44 182.6 119 75.6
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.6e-44 181.8 111 78.4
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 5.6e-44 181.8 119 74.8
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 5.6e-44 181.8 119 75.6
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.2e-43 180.6 111 79.3
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.1e-43 179.9 121 73.6
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.1e-43 179.9 121 73.6
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 2.1e-43 179.9 109 79.8
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.8e-43 179.5 119 73.9
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 3.6e-43 179.1 115 73.9
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 6.2e-43 178.3 109 78.0
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 6.2e-43 178.3 109 79.8
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 8.1e-43 177.9 109 78.0
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 8.1e-43 177.9 109 78.9
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 8.1e-43 177.9 109 78.9
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.3e-42 176.4 120 72.5
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.3e-42 176.4 109 78.0
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 2.3e-42 176.4 109 78.0
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.3e-42 176.4 120 70.8
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 3.1e-42 176.0 121 72.7
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 4.0e-42 175.6 115 74.8
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 5.2e-42 175.3 105 82.9
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 5.2e-42 175.3 121 71.1
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 5.2e-42 175.3 111 77.5
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 6.8e-42 174.9 109 78.9
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 8.9e-42 174.5 110 76.4
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 8.9e-42 174.5 120 70.8
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.2e-41 174.1 121 72.7
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 1.5e-41 173.7 121 71.9
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.0e-41 173.3 109 75.2
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 3.4e-41 172.6 110 74.5
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 5.8e-41 171.8 104 81.7
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.3e-40 170.6 105 79.0
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.7e-40 170.2 120 68.3
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 3.7e-40 169.1 118 68.6
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 3.7e-40 169.1 105 78.1
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 4.9e-40 168.7 109 74.3
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 4.9e-40 168.7 105 77.1
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 4.9e-40 168.7 105 78.1
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 8.3e-40 167.9 109 74.3
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 8.3e-40 167.9 119 68.9
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.1e-39 167.5 109 74.3
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.1e-39 167.5 109 74.3
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.1e-39 167.5 105 77.1
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.4e-39 167.2 105 76.2
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.4e-39 167.2 118 69.5
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.9e-39 166.8 109 72.5
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 3.2e-39 166.0 110 73.6
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 9.2e-39 164.5 118 68.6
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.7e-38 162.9 124 69.4
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 1.3e-37 160.6 114 69.3
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.3e-37 159.8 105 71.4
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 6.6e-37 158.3 114 65.8
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 8.6e-37 157.9 114 66.7
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 4.3e-36 155.6 121 62.8
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 5.6e-36 155.2 114 64.0
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 1.6e-35 153.7 104 68.3
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.8e-35 152.9 103 72.8
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 2.8e-35 152.9 103 72.8
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 3.6e-35 152.5 115 63.5
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.1e-34 151.0 114 62.3
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 1.1e-34 151.0 115 63.5
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.8e-34 150.2 115 62.6
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 1.8e-34 150.2 115 61.7
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.8e-34 150.2 121 65.3
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.3e-34 149.8 129 57.4
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 3.1e-34 149.4 104 66.3
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 4.0e-34 149.1 110 69.1
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.2e-33 147.5 86 83.7
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 1.2e-33 147.5 96 74.0
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 3.4e-33 146.0 116 60.3
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 4.4e-33 145.6 114 64.0
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 5.8e-33 145.2 114 61.4
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.8e-33 145.2 97 74.2
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 9.9e-33 144.4 117 59.8
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 9.9e-33 144.4 96 69.8
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 2.2e-32 143.3 96 74.0
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 2.9e-32 142.9 105 62.9
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 4.9e-32 142.1 133 50.4
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 4.9e-32 142.1 86 80.2
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 4.9e-32 142.1 86 80.2
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 4.9e-32 142.1 88 76.1
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 8.4e-32 141.4 115 56.5
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 3.2e-31 139.4 114 58.8
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.1e-31 139.0 114 57.9
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 7.1e-31 138.3 84 81.0
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 9.2e-31 137.9 114 57.9
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 1.6e-30 137.1 105 63.8
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.1e-30 136.7 114 61.4
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 7.8e-30 134.8 104 63.5
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 7.8e-30 134.8 115 58.3
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.3e-29 134.0 96 67.7
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.3e-29 133.3 110 63.6
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 5.1e-29 132.1 107 65.4
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 6.6e-29 131.7 89 68.5
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 2.5e-28 129.8 114 58.8
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 5.6e-28 128.6 112 58.0
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.5e-25 120.6 124 51.6
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 2.9e-24 116.3 102 57.8
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 9.3e-23 111.3 109 53.2
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 4.6e-22 109.0 67 80.6
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 8.7e-21 104.8 96 57.3
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 4.3e-20 102.4 66 75.8
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 1.8e-18 97.1 104 50.0
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 5.3e-18 95.5 76 63.2
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 4.5e-17 92.4 81 63.0
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 7.6e-17 91.7 76 61.8
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 2.9e-16 89.7 77 63.6
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 8.7e-13 78.2 68 54.4
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 1.5e-12 77.4 102 48.0
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 5.5e-07 58.9 56 57.1


User provided reference genes

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