Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.1e-277 956.8 471 100.0
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.2e-243 846.3 467 89.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.5e-238 829.3 468 87.8
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.2e-235 819.7 467 86.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 4.3e-222 774.6 470 81.1
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.5e-219 766.1 474 78.9
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.1e-205 719.2 472 75.2
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 5.8e-203 711.1 463 76.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 3.8e-202 708.4 465 73.8
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.6e-198 693.7 470 74.0
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 4.2e-193 678.3 463 71.5
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 3.5e-192 675.2 436 76.4
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 6.0e-192 674.5 465 71.2
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.0e-192 674.5 463 72.1
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 8.7e-191 670.6 466 70.4
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 3.3e-190 668.7 465 70.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 3.3e-190 668.7 466 69.3
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.3e-189 666.8 465 69.7
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.8e-189 665.6 467 68.5
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.2e-189 664.5 466 69.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 6.2e-189 664.5 469 69.1
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.4e-185 653.3 465 68.6
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.4e-185 652.5 467 68.7
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.2e-185 652.1 469 67.4
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 7.1e-185 651.0 448 70.3
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 7.1e-185 651.0 462 68.4
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 9.3e-185 650.6 465 67.7
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.6e-184 649.8 469 68.2
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 7.9e-184 647.5 469 67.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.0e-183 647.1 469 67.2
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 3.0e-183 645.6 467 68.5
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.1e-183 644.8 469 66.7
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.5e-182 643.3 459 68.2
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 3.3e-182 642.1 465 67.3
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.4e-180 636.7 464 68.1
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.1e-180 635.6 467 66.0
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 6.9e-180 634.4 461 66.8
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.6e-179 632.5 465 65.4
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.3e-178 630.2 487 63.9
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.7e-178 629.8 469 66.1
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.8e-178 628.6 437 69.8
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 4.9e-178 628.2 465 67.3
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 8.4e-178 627.5 462 66.7
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.1e-177 627.1 464 66.8
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.5e-177 624.8 465 67.3
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.1e-176 622.9 465 67.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.7e-176 622.5 468 64.5
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.8e-175 619.8 465 67.1
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-172 610.1 416 71.4
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 6.9e-172 607.8 465 65.4
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.5e-171 606.7 469 64.4
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.7e-170 603.2 466 64.2
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.9e-170 602.4 465 64.3
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.1e-169 600.5 470 63.6
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 9.3e-169 597.4 492 64.4
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 9.3e-169 597.4 473 63.0
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.6e-168 596.7 472 63.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.9e-167 592.0 469 61.2
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 8.7e-167 590.9 466 62.7
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.3e-165 587.0 438 66.2
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.3e-165 587.0 467 63.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.8e-165 585.1 458 62.2
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 8.2e-165 584.3 457 62.4
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-164 582.4 459 63.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.1e-164 582.0 458 62.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.1e-164 582.0 465 61.5
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 5.3e-164 581.6 464 60.6
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.2e-163 580.5 457 62.8
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.4e-163 578.9 465 64.1
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 4.5e-163 578.6 468 62.4
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.3e-162 577.0 417 68.6
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 3.8e-162 575.5 458 60.9
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-161 573.9 459 63.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.1e-161 573.9 457 60.8
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-161 572.0 459 63.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-160 570.1 458 60.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-160 570.1 459 62.5
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-160 570.1 459 62.5
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.7e-160 569.3 461 62.7
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.6e-160 568.5 458 60.5
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 4.6e-160 568.5 459 62.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 3.9e-159 565.5 458 59.2
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.1e-159 565.1 466 61.2
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 6.7e-159 564.7 458 59.2
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.3e-158 562.0 458 59.0
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 7.4e-158 561.2 471 58.2
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.7e-157 558.9 438 62.6
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 6.3e-157 558.1 458 58.5
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 6.3e-157 558.1 458 60.0
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.4e-156 557.0 457 59.1
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.8e-156 556.6 464 59.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 3.1e-156 555.8 457 59.3
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.6e-152 542.3 462 58.0
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 6.1e-152 541.6 472 58.9
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 7.9e-152 541.2 441 59.0
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 7.9e-152 541.2 472 58.3
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-152 541.2 434 59.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 7.9e-152 541.2 437 61.3
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-151 539.3 430 59.8
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 2.6e-150 536.2 458 58.5
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 6.3e-149 531.6 469 54.2
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.0e-146 524.2 455 56.5
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-146 523.9 430 59.3
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-145 519.2 483 54.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-144 516.5 458 57.0
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.1e-144 516.5 468 55.8
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 3.6e-144 515.8 487 57.5
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 6.3e-141 505.0 445 56.6
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.6e-139 499.6 432 58.1
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.6e-139 499.6 465 54.6
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 6.5e-138 495.0 466 51.9
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.5e-137 493.8 374 62.0
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.1e-136 490.0 467 57.4
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.8e-135 486.9 342 70.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-135 486.1 388 60.8
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 4.0e-135 485.7 458 54.4
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.1e-129 467.6 364 60.4
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.5e-121 440.7 508 48.4
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.5e-121 439.9 446 52.5
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 4.2e-121 439.1 433 53.1
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.8e-110 402.1 500 45.0
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.1e-100 371.3 463 44.7
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.1e-83 313.9 266 59.4
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.5e-81 307.8 427 40.3
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.3e-81 306.2 410 41.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 7.3e-81 305.4 233 69.1
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.0e-74 283.5 198 67.7
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.1e-71 275.0 183 71.6
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 5.3e-71 272.7 148 86.5
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 6.4e-69 265.8 197 69.5
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.1e-68 265.0 197 69.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.7e-64 250.0 225 57.3
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 7.4e-49 199.1 315 40.0
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-48 197.2 222 48.6
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-47 195.3 377 37.1
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-45 188.3 219 47.5
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.8e-42 177.9 273 39.6
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 2.8e-40 170.6 110 70.0
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.8e-32 144.1 193 42.0
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.0e-30 137.9 83 78.3
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.2e-29 134.4 115 57.4
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-29 134.4 179 44.1
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-28 130.6 213 39.0
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-27 128.6 132 50.0
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-25 121.3 213 39.0
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.4e-25 120.2 109 58.7
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-23 114.8 144 45.1
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-22 112.1 144 44.4
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 3.5e-22 110.5 90 60.0
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 2.2e-21 107.8 103 53.4
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-21 107.8 123 48.0
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-21 105.9 76 59.2
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-20 104.8 76 59.2
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 4.2e-20 103.6 115 52.2
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-20 103.6 120 48.3
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 3.6e-19 100.5 217 36.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 3.0e-18 97.4 80 56.2
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.0e-18 97.4 57 68.4
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.0e-18 97.1 56 78.6
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-17 94.4 64 60.9
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.6e-17 94.4 93 59.1
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.2e-13 81.3 56 60.7
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.4e-12 75.9 176 29.0
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 2.1e-11 74.7 111 41.4
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.0e-11 72.8 176 28.4
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.0e-10 70.9 176 27.8
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 5.2e-10 70.1 53 56.6
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 1.5e-09 68.6 85 43.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 4.4e-09 67.0 53 50.9
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 4.1e-07 60.5 47 57.4
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 1.6e-06 58.5 40 57.5
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-06 58.5 70 40.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-06 58.5 70 40.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.5e-06 57.4 70 40.0


User provided reference genes

Program Settings