Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 1.4e-114 416.4 222 100.0
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.5e-89 333.2 222 79.7
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.5e-76 290.0 225 67.6
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 7.7e-73 277.7 199 72.9
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 3.2e-71 272.3 199 71.4
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 1.6e-70 270.0 222 65.8
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 2.2e-67 259.6 228 61.0
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 2.0e-65 253.1 228 60.1
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 5.9e-65 251.5 184 71.2
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 3.2e-63 245.7 147 82.3
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 9.5e-55 217.6 220 55.9
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 6.8e-53 211.5 223 53.8
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.8e-50 203.4 164 64.6
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 9.2e-50 201.1 191 57.6
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.2e-49 200.7 195 56.9
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 1.7e-48 196.8 219 50.2
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 2.3e-48 196.4 225 52.4
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 3.0e-48 196.1 204 51.0
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 5.0e-48 195.3 195 55.4
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.9e-47 193.4 205 51.7
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 3.3e-47 192.6 222 51.8
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 9.5e-47 191.0 226 51.8
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 2.1e-46 189.9 178 55.6
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 3.6e-46 189.1 163 58.3
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 4.7e-46 188.7 164 57.9
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 4.7e-46 188.7 175 55.4
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 8.0e-46 188.0 224 49.6
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 1.0e-45 187.6 178 60.1
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.0e-45 187.6 178 57.9
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.0e-45 187.6 178 57.9
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 1.4e-45 187.2 178 55.6
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 2.3e-45 186.4 178 57.9
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 2.3e-45 186.4 177 57.1
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 4.0e-45 185.7 177 55.9
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 5.2e-45 185.3 208 51.0
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 8.9e-45 184.5 190 52.6
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.2e-44 184.1 196 54.1
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 2.0e-44 183.3 198 52.5
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 2.6e-44 183.0 195 52.8
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 5.8e-44 181.8 198 51.0
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 7.5e-44 181.4 182 52.7
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 9.8e-44 181.0 183 53.6
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 1.7e-43 180.3 220 48.6
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 2.2e-43 179.9 177 56.5
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 2.2e-43 179.9 186 53.2
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 2.9e-43 179.5 196 52.0
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 3.7e-43 179.1 187 52.4
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 4.9e-43 178.7 184 56.0
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 4.9e-43 178.7 180 53.9
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 3.2e-42 176.0 163 52.8
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 7.0e-42 174.9 195 48.7
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 7.0e-42 174.9 195 48.7
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 7.0e-42 174.9 178 52.8
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 3.5e-41 172.6 210 50.5
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 6.0e-41 171.8 197 48.7
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 7.8e-41 171.4 175 51.4
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.0e-40 171.0 180 51.7
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.0e-40 171.0 196 48.0
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.0e-40 171.0 215 49.3
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.7e-40 170.2 195 48.2
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 6.6e-40 168.3 181 51.9
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 6.6e-40 168.3 177 54.8
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.6e-40 168.3 195 48.2
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 3.3e-39 166.0 178 51.7
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 4.3e-39 165.6 181 51.9
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 4.3e-39 165.6 220 45.9
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 4.3e-39 165.6 194 48.5
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.2e-38 164.1 195 48.2
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 1.2e-38 164.1 183 49.2
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 6.2e-38 161.8 224 47.3
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 2.3e-37 159.8 145 57.9
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 5.2e-37 158.7 193 45.1
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 6.8e-37 158.3 177 52.0
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 8.9e-37 157.9 221 43.4
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 5.8e-36 155.2 178 47.2
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 9.8e-36 154.5 179 47.5
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 9.8e-36 154.5 180 49.4
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.3e-35 154.1 236 42.4
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 2.9e-35 152.9 221 43.0
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 2.9e-35 152.9 204 44.6
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 4.1e-34 149.1 164 48.2
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 4.1e-34 149.1 158 52.5
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 1.2e-33 147.5 163 50.3
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 7.8e-33 144.8 192 46.9
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.0e-32 142.9 154 48.7
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 5.6e-31 138.7 165 47.9
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 2.8e-30 136.3 191 43.5
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 6.2e-30 135.2 180 48.9
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.8e-29 133.7 152 47.4
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 3.1e-29 132.9 163 44.8
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 8.9e-29 131.3 164 44.5
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 1.2e-28 131.0 286 33.6
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 4.4e-28 129.0 136 52.2
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 6.4e-27 125.2 145 53.1
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 2.7e-25 119.8 169 40.8
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 3.0e-24 116.3 168 37.5
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 3.3e-23 112.8 143 49.0
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 3.3e-23 112.8 136 46.3
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.2e-22 110.9 173 39.9
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 3.6e-22 109.4 146 41.8
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 4.4e-20 102.4 140 44.3
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 2.9e-19 99.8 142 43.0
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 6.6e-16 88.6 105 48.6
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.5e-12 77.4 117 35.9
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 4.5e-12 75.9 76 56.6
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 4.5e-12 75.9 76 56.6
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 1.8e-08 63.9 40 67.5
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 3.0e-08 63.2 84 46.4
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.3e-06 57.8 141 32.6


User provided reference genes

Program Settings