Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 3.5e-172 608.2 310 100.0
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 1.9e-141 506.1 318 84.0
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 6.0e-140 501.1 314 84.7
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 3.9e-139 498.4 317 83.0
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 4.6e-124 448.4 319 74.9
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 2.3e-123 446.0 317 75.4
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 1.9e-122 443.0 323 72.8
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.5e-114 416.8 319 70.8
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.1e-112 410.6 300 70.3
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 7.1e-109 397.9 329 66.0
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.7e-108 396.0 329 66.0
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.2e-103 380.6 255 76.1
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 3.4e-103 379.0 249 77.9
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 7.6e-103 377.9 252 74.6
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 4.2e-101 372.1 323 63.5
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 2.7e-100 369.4 322 65.2
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 3.6e-100 369.0 272 71.7
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 7.9e-100 367.9 312 66.3
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.3e-99 367.1 250 74.4
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.8e-99 366.7 306 64.4
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.3e-99 366.3 246 76.0
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.0e-99 365.9 242 76.9
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 3.9e-99 365.5 307 64.8
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 8.7e-99 364.4 246 75.6
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 8.7e-99 364.4 248 73.8
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 2.5e-98 362.8 261 72.4
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 2.5e-98 362.8 288 65.6
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 9.7e-98 360.9 321 61.7
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 9.7e-98 360.9 312 64.1
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 1.3e-97 360.5 246 74.0
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.2e-97 359.8 245 74.7
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.8e-97 359.4 234 76.1
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 4.8e-97 358.6 297 65.0
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 1.1e-96 357.5 326 62.0
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 1.4e-96 357.1 281 66.9
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.8e-96 356.7 317 61.5
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 2.4e-96 356.3 265 69.4
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 6.9e-96 354.8 321 62.0
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.2e-95 354.0 241 73.4
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 3.4e-95 352.4 330 58.8
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 5.9e-95 351.7 315 61.0
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 5.9e-95 351.7 317 61.8
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 2.2e-94 349.7 290 63.8
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 1.1e-93 347.4 322 57.5
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 1.4e-93 347.1 254 70.1
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 3.2e-93 345.9 316 60.4
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 4.2e-93 345.5 313 59.4
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.2e-92 344.0 260 67.7
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.6e-92 343.6 321 60.4
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 2.1e-92 343.2 329 57.1
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.1e-92 343.2 295 62.7
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 3.6e-92 342.4 324 58.6
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 4.7e-92 342.0 314 60.5
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 6.1e-92 341.7 227 74.9
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 6.1e-92 341.7 305 60.3
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.4e-91 340.5 282 63.5
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 5.1e-91 338.6 227 74.0
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 5.1e-91 338.6 319 59.6
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 1.5e-90 337.0 227 73.6
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 7.4e-90 334.7 227 73.1
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 7.4e-90 334.7 227 73.1
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.7e-89 333.6 257 66.1
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 2.2e-89 333.2 224 74.1
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 2.8e-89 332.8 227 73.1
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 1.1e-88 330.9 238 71.8
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 1.4e-88 330.5 227 72.7
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.4e-88 330.5 299 59.5
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 2.4e-88 329.7 228 71.9
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 4.1e-88 328.9 238 71.4
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 4.1e-88 328.9 227 72.2
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 4.1e-88 328.9 227 72.2
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 2.0e-87 326.6 337 54.6
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 4.5e-87 325.5 301 60.1
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 1.7e-86 323.6 224 71.0
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.2e-86 323.2 224 71.0
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 2.9e-86 322.8 298 59.1
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 6.5e-86 321.6 227 70.9
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 8.5e-86 321.2 318 56.0
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.9e-85 320.1 316 56.3
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 4.2e-85 318.9 289 60.9
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 7.2e-85 318.2 265 63.0
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 9.4e-85 317.8 277 62.1
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 2.1e-84 316.6 209 74.6
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 2.1e-84 316.6 312 57.4
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 4.7e-84 315.5 260 63.5
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 8.0e-84 314.7 309 55.3
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 1.4e-83 313.9 317 56.2
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 3.0e-83 312.8 223 70.4
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 8.8e-83 311.2 198 77.8
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 1.5e-82 310.5 198 75.8
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 4.4e-82 308.9 259 62.5
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.7e-81 307.0 203 75.4
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 1.4e-80 303.9 203 72.9
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 1.8e-80 303.5 228 66.7
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.8e-80 303.5 318 53.1
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.6e-79 299.7 248 63.7
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 6.5e-78 295.0 256 60.5
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 6.5e-78 295.0 202 72.3
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.1e-77 294.3 199 76.4
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 1.5e-77 293.9 288 58.3
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.1e-76 290.0 206 71.8
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 3.6e-76 289.3 294 53.4
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.2e-73 280.0 255 58.4
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.3e-70 270.8 199 67.8
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 8.8e-67 258.1 199 64.3
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 7.2e-61 238.4 197 59.4
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 1.4e-59 234.2 228 53.1
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.2e-58 231.1 209 54.5
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 2.2e-57 226.9 209 59.3
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 4.1e-56 222.6 202 54.5
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.7e-54 217.2 205 54.1
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 2.9e-54 216.5 150 70.0
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.6e-52 210.7 202 57.4
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.0e-34 150.6 110 69.1
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.9e-33 146.7 173 49.7
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 3.4e-26 123.2 179 43.6
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.7e-17 94.4 74 62.2
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 4.9e-17 92.8 74 63.5
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 1.8e-11 74.3 50 72.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 7.1e-08 62.4 54 63.0
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 2.7e-07 60.5 108 41.7


User provided reference genes

Program Settings