Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 4.8e-114 414.5 202 100.0
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 7.7e-96 354.0 202 85.6
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 3.4e-91 338.6 202 82.7
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 2.2e-87 325.9 202 77.2
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 1.0e-84 317.0 191 78.5
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 4.4e-83 311.6 202 74.3
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.7e-82 309.7 189 76.7
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 7.0e-81 304.3 202 73.3
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 7.7e-80 300.8 197 73.1
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.7e-79 299.7 251 65.3
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 8.6e-79 297.4 196 71.4
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 5.5e-78 294.7 163 82.8
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 7.2e-78 294.3 193 72.0
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 9.5e-78 293.9 198 72.2
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 9.5e-78 293.9 195 70.8
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 9.5e-78 293.9 191 73.8
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 1.6e-77 293.1 162 80.2
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.8e-77 292.4 198 71.7
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 3.6e-77 292.0 160 82.5
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 3.6e-77 292.0 161 81.4
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 4.7e-77 291.6 161 82.6
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 1.4e-76 290.0 190 72.1
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 2.3e-76 289.3 170 75.9
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 4.0e-76 288.5 195 68.7
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 6.8e-76 287.7 167 77.8
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 6.8e-76 287.7 194 70.1
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.2e-75 287.0 161 79.5
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 1.5e-75 286.6 165 78.2
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.4e-75 285.4 189 69.3
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 4.4e-75 285.0 191 72.3
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 4.4e-75 285.0 195 68.7
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 5.7e-75 284.6 195 68.7
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 9.8e-75 283.9 161 78.3
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.2e-74 282.7 189 69.8
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 3.7e-74 282.0 217 64.1
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 3.7e-74 282.0 190 71.6
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 8.3e-74 280.8 188 68.6
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.1e-73 280.4 162 79.6
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 1.1e-73 280.4 191 71.2
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 1.1e-73 280.4 191 71.2
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.8e-73 279.6 194 69.6
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.8e-73 279.6 180 71.1
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 5.4e-73 278.1 196 69.9
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 7.0e-73 277.7 190 69.5
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 7.0e-73 277.7 191 68.6
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 9.2e-73 277.3 202 67.8
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 1.2e-72 276.9 195 69.7
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 2.7e-72 275.8 195 67.7
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 2.7e-72 275.8 194 68.6
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 2.7e-72 275.8 192 68.2
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 5.9e-72 274.6 161 74.5
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 7.8e-72 274.2 187 70.6
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 7.8e-72 274.2 193 66.8
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.3e-71 273.5 198 66.2
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 1.3e-71 273.5 199 67.8
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.3e-71 273.5 194 68.0
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.3e-71 272.7 198 68.2
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.9e-71 271.9 198 65.7
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 6.6e-71 271.2 162 75.9
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.5e-70 270.0 161 75.8
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.5e-70 270.0 188 69.7
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.9e-70 269.6 198 67.7
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.9e-70 269.6 190 67.9
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.5e-70 269.2 205 64.4
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.5e-70 269.2 199 67.3
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.5e-70 269.2 184 71.7
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 3.3e-70 268.9 161 75.8
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 5.6e-70 268.1 161 75.8
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 5.6e-70 268.1 161 75.8
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 7.3e-70 267.7 194 65.5
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 7.3e-70 267.7 196 66.8
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 9.5e-70 267.3 173 70.5
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.2e-69 266.9 161 75.2
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 2.1e-69 266.2 189 64.6
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.1e-69 266.2 198 66.7
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 8.0e-69 264.2 197 65.5
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 1.0e-68 263.8 161 74.5
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 2.3e-68 262.7 193 66.3
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 2.3e-68 262.7 161 73.3
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 3.1e-68 262.3 161 75.2
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 4.0e-68 261.9 196 66.3
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 5.2e-68 261.5 161 73.3
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 5.2e-68 261.5 161 73.3
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 5.2e-68 261.5 161 73.3
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 5.2e-68 261.5 191 64.4
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 6.8e-68 261.2 161 73.3
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 8.9e-68 260.8 162 74.1
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 8.9e-68 260.8 162 74.1
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.5e-67 260.0 197 63.5
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.5e-67 260.0 161 73.3
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 1.5e-67 260.0 161 73.3
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 2.6e-67 259.2 194 61.3
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 5.4e-65 251.5 194 63.4
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 7.0e-65 251.1 159 73.6
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.6e-64 250.0 167 74.9
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 4.6e-64 248.4 140 80.7
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 3.0e-63 245.7 193 62.2
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 1.1e-62 243.8 159 69.2
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 4.7e-61 238.4 128 83.6
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 4.7e-61 238.4 199 60.3
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 1.1e-60 237.3 143 75.5
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.8e-60 236.5 162 67.3
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 3.1e-60 235.7 157 72.6
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 3.1e-60 235.7 159 69.2
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 2.0e-59 233.0 156 72.4
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 3.4e-59 232.3 246 50.8
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 4.4e-59 231.9 252 49.2
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 5.8e-59 231.5 156 69.9
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 3.0e-55 219.2 165 60.0
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 2.3e-52 209.5 150 66.0
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.3e-50 203.8 169 54.4
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 3.2e-49 199.1 209 47.8
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 3.9e-47 192.2 104 81.7
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 2.5e-46 189.5 146 59.6
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 5.6e-46 188.3 166 56.0
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 2.0e-43 179.9 139 65.5
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.7e-42 176.8 104 74.0
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 2.2e-42 176.4 103 74.8
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 3.8e-42 175.6 135 60.0
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 7.1e-41 171.4 147 57.8
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.1e-40 169.9 139 61.2
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.7e-39 166.8 105 71.4
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 5.1e-39 165.2 97 76.3
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.5e-38 163.7 88 84.1
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.5e-35 153.7 91 75.8
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 7.6e-35 151.4 120 54.2
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 9.9e-35 151.0 225 39.6
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 1.9e-33 146.7 166 46.4
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 1.9e-33 146.7 136 55.1
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 7.3e-30 134.8 90 65.6
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.4e-28 130.6 84 69.0
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 1.0e-23 114.4 72 70.8
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 4.3e-22 109.0 96 58.3
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 4.0e-20 102.4 189 37.0
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 8.4e-18 94.7 192 35.9
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 3.7e-13 79.3 44 79.5


User provided reference genes

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