Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 2.5e-44 181.8 95 100.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.7e-40 169.1 95 94.7
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 5.2e-26 120.9 95 74.7
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.7e-24 115.9 98 71.4
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 4.5e-22 107.8 93 68.8
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.7e-21 105.9 91 62.6
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 6.5e-21 104.0 104 57.7
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 8.5e-21 103.6 94 63.8
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 8.8e-18 93.6 106 55.7
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 2.3e-13 79.0 89 51.7
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 2.9e-13 78.6 89 53.9
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.8e-13 78.2 89 51.7
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 6.5e-13 77.4 96 53.1
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 1.5e-12 76.3 83 51.8
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.9e-12 75.9 90 51.1
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.5e-12 75.5 86 54.7
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 4.2e-12 74.7 125 44.0
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 5.5e-12 74.3 77 51.9
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 5.5e-12 74.3 77 51.9
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.2e-11 73.2 121 43.0
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.1e-11 72.4 89 49.4
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.1e-11 72.4 99 44.4
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.1e-11 72.4 99 44.4
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 2.1e-11 72.4 100 52.0
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 2.8e-11 72.0 100 45.0
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.8e-11 72.0 94 46.8
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.6e-11 71.6 105 47.6
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 4.7e-11 71.2 87 52.9
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 4.7e-11 71.2 77 51.9
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 4.7e-11 71.2 103 43.7
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 6.1e-11 70.9 84 51.2
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 6.1e-11 70.9 105 45.7
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.0e-10 70.1 77 51.9
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.0e-10 70.1 99 43.4
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.4e-10 69.7 96 47.9
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.3e-10 68.9 92 44.6
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 2.3e-10 68.9 96 49.0
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 4.0e-10 68.2 89 44.9
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 4.0e-10 68.2 85 48.2
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.2e-10 67.8 108 41.7
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 8.8e-10 67.0 124 38.7
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.2e-09 66.6 99 41.4
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.5e-09 66.2 82 52.4
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.5e-09 66.2 77 50.6
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.0e-09 65.9 84 42.9
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 2.6e-09 65.5 81 46.9
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 2.6e-09 65.5 98 43.9
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.6e-09 65.5 121 36.4
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.6e-09 65.5 77 49.4
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.4e-09 65.1 121 36.4
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.4e-09 64.7 121 36.4
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.5e-09 63.9 99 46.5
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 1.3e-08 63.2 84 45.2
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.2e-08 62.4 97 41.2
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 2.2e-08 62.4 123 37.4
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 2.8e-08 62.0 89 44.9
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.8e-08 62.0 100 42.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.9e-08 61.2 85 51.8
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 4.9e-08 61.2 92 43.5
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 6.3e-08 60.8 104 41.3
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.3e-08 60.8 47 66.0
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.3e-08 60.8 107 34.6
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 8.3e-08 60.5 93 41.9
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.3e-08 60.5 90 43.3
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 8.3e-08 60.5 109 40.4
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-07 60.1 104 37.5
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-07 59.7 104 40.4
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-07 59.7 104 40.4
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 1.4e-07 59.7 104 40.4
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.4e-07 59.7 78 44.9
Migut.M00649 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.4e-07 59.7 70 45.7
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.8e-07 59.3 117 36.8
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.8e-07 59.3 103 39.8
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 1.8e-07 59.3 96 47.9
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-07 58.9 111 37.8
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.4e-07 58.9 111 37.8
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.4e-07 58.9 111 37.8
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 2.4e-07 58.9 95 38.9
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 4.1e-07 58.2 101 41.6
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 4.1e-07 58.2 120 38.3
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 4.1e-07 58.2 92 42.4
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.1e-07 58.2 87 42.5
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.1e-07 58.2 77 44.2
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.1e-07 58.2 37 81.1
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 5.4e-07 57.8 104 38.5
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 7.0e-07 57.4 110 39.1
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 7.0e-07 57.4 131 35.1
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 9.2e-07 57.0 98 40.8
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.6e-06 56.2 104 40.4
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 109 38.5
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.6e-06 56.2 96 41.7
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 93 43.0
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.0e-06 55.8 104 39.4
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.0e-06 55.8 53 56.6
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 2.0e-06 55.8 87 41.4
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.0e-06 55.8 87 40.2
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.7e-06 55.5 110 36.4
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 2.7e-06 55.5 97 40.2
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.7e-06 55.5 104 39.4
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 2.7e-06 55.5 104 39.4
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 2.7e-06 55.5 95 40.0
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 2.7e-06 55.5 95 40.0
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 3.5e-06 55.1 90 41.1
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 3.5e-06 55.1 89 41.6
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 3.5e-06 55.1 89 41.6
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 3.5e-06 55.1 39 74.4
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.5e-06 55.1 78 44.9
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 4.5e-06 54.7 95 41.1
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 4.5e-06 54.7 89 40.4
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 4.5e-06 54.7 95 41.1
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 4.5e-06 54.7 89 40.4
Solyc10g007580.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 4.5e-06 54.7 60 51.7
Sopen10g003500 Solanum pennellii HOM05D004022 ORTHO05D004090 4.5e-06 54.7 60 51.7
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.5e-06 54.7 104 39.4
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 5.9e-06 54.3 104 39.4
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 5.9e-06 54.3 41 65.9
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 7.8e-06 53.9 127 33.1
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 7.8e-06 53.9 85 38.8


User provided reference genes

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