Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 0.0e+00 1810.4 973 100.0
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1588.9 944 85.2
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 0.0e+00 1481.5 956 83.7
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 0.0e+00 1234.9 949 71.9
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1210.3 943 66.9
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1199.1 946 67.4
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1164.4 962 67.6
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 0.0e+00 1127.1 953 66.0
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1108.6 970 65.6
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1101.3 962 62.2
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1081.2 946 63.2
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 0.0e+00 1080.1 946 65.0
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1075.1 961 59.9
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 1.7e-308 1062.8 975 59.0
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 9.1e-307 1057.0 945 59.9
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 1.3e-305 1053.1 971 60.4
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 3.6e-303 1045.0 956 59.3
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 6.3e-300 1034.2 958 59.0
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 1.8e-299 1032.7 934 59.2
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 2.4e-299 1032.3 980 57.1
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.0e-297 1026.9 943 61.1
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 1.0e-297 1026.9 964 58.9
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 8.5e-297 1023.8 949 61.2
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 3.6e-295 1018.5 953 59.6
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 7.5e-293 1010.7 970 57.6
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.3e-292 1010.0 955 60.5
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 2.2e-292 1009.2 960 58.2
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 2.9e-289 998.8 959 55.9
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 6.5e-289 997.7 970 56.8
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 4.2e-288 995.0 978 57.5
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 9.4e-288 993.8 955 57.2
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.2e-287 993.4 822 61.6
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 1.2e-287 993.4 960 56.0
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 1.6e-287 993.0 951 56.7
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 4.7e-287 991.5 963 56.9
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 8.0e-287 990.7 963 56.8
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 2.3e-286 989.2 930 57.1
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 6.8e-286 987.6 969 57.3
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.3e-284 983.4 845 59.4
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 1.3e-284 983.4 960 56.5
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 2.4e-283 979.2 932 56.5
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 9.2e-283 977.2 959 54.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 2.9e-281 972.2 965 55.8
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 1.9e-280 969.5 947 58.2
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 9.5e-280 967.2 988 56.2
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 1.3e-276 956.8 960 58.9
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.9e-276 955.7 932 56.2
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 3.5e-274 948.7 945 56.0
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.7e-271 938.3 971 53.0
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.2e-271 937.9 971 53.0
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.5e-269 933.3 971 52.4
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 2.0e-269 932.9 955 55.9
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 4.4e-269 931.8 971 52.9
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 2.9e-268 929.1 972 53.2
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.7e-268 928.7 971 53.0
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.0e-265 920.6 818 59.3
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 1.3e-265 920.2 947 54.6
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 2.3e-265 919.5 980 51.9
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.6e-265 917.9 818 59.2
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 4.3e-264 915.2 813 59.3
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 3.9e-257 892.1 936 57.2
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 5.6e-256 888.3 965 52.1
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 2.1e-255 886.3 948 54.1
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 3.1e-254 882.5 877 54.7
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 2.0e-253 879.8 849 56.2
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 3.4e-253 879.0 854 55.4
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.5e-250 869.0 971 51.2
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.9e-248 863.2 957 54.0
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 3.3e-248 862.4 965 50.9
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 2.1e-247 859.8 846 54.7
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.1e-246 857.4 914 55.5
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 7.6e-245 851.3 979 49.1
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 2.2e-244 849.7 872 52.8
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 3.8e-244 849.0 828 55.3
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 4.9e-244 848.6 982 49.6
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 4.9e-244 848.6 830 54.3
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 6.0e-242 841.6 960 54.8
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 8.7e-241 837.8 984 49.9
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.5e-240 836.3 959 50.1
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 3.3e-240 835.9 875 52.0
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.3e-239 833.9 972 48.7
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.3e-239 833.9 972 48.7
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 2.4e-238 829.7 977 48.0
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 2.4e-238 829.7 973 49.1
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 2.2e-236 823.2 970 47.5
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 4.9e-236 822.0 970 47.4
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 1.1e-232 810.8 873 51.3
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.5e-232 810.4 968 50.4
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.6e-232 807.7 689 59.9
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 4.0e-230 802.4 967 49.8
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.5e-229 800.4 977 46.9
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 5.8e-229 798.5 866 50.8
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 2.9e-228 796.2 853 51.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.0e-225 787.7 818 51.2
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 8.1e-223 778.1 781 53.9
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 1.5e-216 757.3 967 48.2
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.3e-216 756.1 763 52.8
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.1e-211 741.1 754 53.4
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 5.1e-201 705.7 861 46.7
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 9.7e-192 674.9 597 55.3
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.7e-184 649.0 539 60.3
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 7.2e-179 632.1 539 57.9
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 5.7e-176 622.5 547 58.0
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.6e-170 604.4 642 50.2
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 5.2e-153 546.2 472 72.0
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 3.6e-138 496.9 677 44.6
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.5e-123 448.4 471 48.4
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 3.1e-121 440.7 403 53.8
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 4.2e-118 430.3 396 53.5
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 6.7e-92 343.2 399 58.9
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.2e-80 305.8 326 52.1
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 5.0e-79 300.4 751 32.9
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.2e-67 262.7 282 56.0
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 7.2e-54 216.9 313 36.7
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.2e-40 172.9 477 29.1
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.2e-40 172.9 477 29.1
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.6e-40 172.6 156 47.4
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.5e-40 171.4 380 32.1
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.0e-39 169.9 474 29.7
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.0e-39 167.5 187 50.8
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.1e-29 135.6 488 26.6
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.1e-28 133.3 314 30.6
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 8.3e-26 123.6 392 28.8
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.7e-18 99.4 359 27.3
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.8e-18 98.2 304 28.0
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.5e-14 85.5 56 73.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.7e-13 81.3 374 23.8
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.4e-11 74.7 88 47.7
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.4e-09 69.7 353 24.1
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 7.1e-09 67.4 130 32.3
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 7.8e-08 63.9 155 29.0
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 1.3e-07 63.2 266 25.9
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 8.7e-07 60.5 154 25.3
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 1.1e-06 60.1 146 32.2
Mapoly0086s0081 Marchantia polymorpha HOM05D003725 ORTHO05D004294 5.6e-06 57.8 148 27.7
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 9.6e-06 57.0 119 31.1


User provided reference genes

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