Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 6.8e-181 637.5 391 100.0
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.4e-125 453.8 397 80.6
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 9.3e-122 441.0 408 71.6
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.3e-120 437.2 397 78.3
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 6.2e-118 428.3 412 64.1
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.2e-115 419.9 403 62.8
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.4e-114 416.4 403 65.0
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.4e-98 364.0 339 62.5
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.6e-97 360.5 431 56.6
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 5.9e-92 342.0 414 52.7
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 7.9e-89 331.6 435 56.6
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.3e-87 326.2 414 54.1
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.3e-86 324.3 414 53.6
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.3e-86 324.3 414 54.8
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.1e-85 321.2 439 54.9
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 6.9e-85 318.5 415 50.6
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 3.2e-82 309.7 440 47.3
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 3.0e-80 303.1 406 56.7
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.7e-79 298.9 426 56.3
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.3e-78 297.7 433 55.9
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.2e-78 297.0 414 55.6
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.8e-78 296.6 435 56.3
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-78 296.2 433 56.1
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 3.7e-78 296.2 430 56.0
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 4.8e-78 295.8 434 56.0
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.4e-77 293.5 403 48.1
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 5.3e-77 292.4 407 54.5
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 4.5e-76 289.3 409 50.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.0e-75 288.1 413 53.3
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.3e-75 287.7 420 51.0
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 5.0e-75 285.8 414 47.6
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 5.0e-75 285.8 414 47.6
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 6.5e-75 285.4 403 48.9
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 2.5e-74 283.5 418 51.0
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.0e-71 273.9 421 45.4
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.3e-71 273.1 402 51.0
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 5.7e-71 272.3 413 51.6
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.3e-70 271.2 420 49.0
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.2e-70 270.4 409 48.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 8.2e-70 268.5 413 47.7
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.1e-69 266.5 417 50.4
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-68 264.2 418 50.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.5e-68 262.7 415 48.7
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.5e-67 258.8 402 47.3
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.5e-66 257.7 408 49.3
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.9e-66 257.3 402 47.0
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.1e-65 253.8 439 45.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 4.7e-65 252.7 408 43.9
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.0e-64 250.0 395 46.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 3.4e-63 246.5 409 47.9
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.2e-62 243.8 395 45.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.0e-59 235.0 445 43.8
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.7e-59 234.2 429 48.7
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.8e-56 224.2 429 42.7
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.0e-56 223.4 389 41.6
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 3.0e-56 223.4 398 41.7
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 7.5e-55 218.8 364 45.3
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.7e-54 217.6 249 55.8
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.0e-52 210.7 376 39.6
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.0e-52 210.7 376 39.6
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-51 208.0 401 41.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.8e-51 206.5 395 43.8
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.0e-51 206.1 381 39.6
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.9e-50 204.1 318 45.9
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.9e-50 204.1 381 43.6
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.8e-48 197.6 402 39.1
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 8.9e-48 195.3 401 39.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 8.9e-48 195.3 397 37.8
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.4e-47 193.4 402 42.5
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.9e-46 190.3 402 39.3
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.9e-46 190.3 402 39.3
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 6.4e-46 189.1 377 39.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 3.2e-45 186.8 398 37.4
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 5.4e-45 186.0 394 37.8
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.2e-44 184.9 400 40.8
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.0e-44 184.1 401 41.1
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.0e-43 181.8 386 43.8
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 5.0e-43 179.5 391 41.2
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.0e-43 179.5 450 43.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.1e-42 178.3 410 40.2
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.5e-42 177.9 434 43.1
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.6e-41 174.5 377 36.3
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.1e-41 174.1 380 37.4
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.6e-41 173.3 389 42.7
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 4.7e-41 172.9 389 37.3
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 4.0e-40 169.9 397 40.8
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 3.4e-39 166.8 394 39.3
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 3.4e-39 166.8 392 36.5
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.4e-39 166.8 376 38.0
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 9.8e-39 165.2 375 35.2
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 9.8e-39 165.2 375 35.2
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 6.4e-38 162.5 376 37.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 8.3e-38 162.2 385 42.9
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 8.3e-38 162.2 385 42.9
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.9e-37 161.0 387 37.5
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.4e-37 160.6 390 34.6
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.4e-37 160.6 226 48.7
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 5.4e-37 159.5 402 39.1
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.3e-35 154.8 485 41.2
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 6.6e-35 152.5 410 42.2
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 3.3e-34 150.2 465 39.8
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 6.2e-33 146.0 437 36.8
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-31 141.4 428 36.4
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 4.4e-31 139.8 393 38.2
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.3e-30 138.3 437 41.0
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.3e-30 138.3 361 33.0
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-28 131.7 407 34.4
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.7e-28 130.6 383 34.2
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 6.0e-28 129.4 418 32.3
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 2.3e-27 127.5 242 51.7
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-26 124.4 436 34.9
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 5.6e-26 122.9 440 36.4
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 5.6e-26 122.9 390 32.3
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 7.3e-26 122.5 388 32.5
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 7.3e-26 122.5 388 32.5
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 7.3e-26 122.5 387 30.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.2e-25 121.7 379 32.5
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.6e-25 121.3 403 34.5
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.8e-25 120.6 479 32.2
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 2.8e-25 120.6 440 36.4
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 6.2e-25 119.4 440 35.9
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.2e-25 119.4 379 31.7
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 6.2e-25 119.4 379 31.7
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 8.1e-25 119.0 403 34.5
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 8.1e-25 119.0 289 36.7
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.8e-24 117.9 436 34.2
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.8e-24 117.9 372 29.6
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 3.1e-24 117.1 425 34.6
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 4.0e-24 116.7 417 40.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 5.2e-24 116.3 403 33.0
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 6.8e-24 115.9 446 33.0
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.0e-23 114.4 373 37.8
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 5.8e-23 112.8 479 34.7
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 6.4e-22 109.4 301 32.6
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.4e-21 108.2 375 27.7
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 7.1e-21 105.9 326 31.9
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 9.2e-21 105.5 458 37.6
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.6e-20 104.8 231 36.4
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 2.7e-20 104.0 222 38.7
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-19 101.7 432 32.9
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.5e-18 97.4 316 29.4
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 7.3e-18 95.9 127 45.7
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.8e-17 94.0 388 28.4
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.4e-16 91.7 196 32.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-15 88.2 442 36.7
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 9.9e-15 85.5 360 28.3
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.7e-14 84.7 117 63.2
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.4e-13 79.7 421 25.9
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.4e-07 60.5 71 53.5
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 3.8e-06 57.0 62 53.2
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 4.9e-06 56.6 216 25.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 8.4e-06 55.8 103 35.0


User provided reference genes

Program Settings