Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 8.6e-45 183.3 96 100.0
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 4.9e-40 167.5 96 90.6
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 4.9e-40 167.5 96 90.6
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 4.5e-38 161.0 96 85.4
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 6.6e-37 157.1 96 82.3
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 1.5e-36 156.0 96 82.3
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 4.3e-36 154.5 96 81.2
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 4.3e-36 154.5 96 80.2
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 1.2e-35 152.9 96 80.2
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 2.1e-35 152.1 96 79.2
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.6e-35 151.4 96 78.1
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.6e-35 151.4 96 78.1
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 3.6e-35 151.4 96 77.1
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 4.7e-35 151.0 96 78.1
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.0e-34 149.8 96 79.2
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.4e-34 149.4 102 75.5
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 1.4e-34 149.4 96 77.1
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 2.3e-34 148.7 96 81.2
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 2.3e-34 148.7 96 81.2
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 8.9e-34 146.7 96 72.9
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 1.5e-33 146.0 96 75.0
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 1.5e-33 146.0 96 77.1
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 1.5e-33 146.0 96 76.0
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 1.5e-33 146.0 96 76.0
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.5e-33 146.0 96 76.0
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.0e-33 145.6 96 76.0
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 2.0e-33 145.6 96 76.0
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 2.0e-33 145.6 96 76.0
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 2.6e-33 145.2 96 75.0
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 3.4e-33 144.8 96 74.0
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 5.8e-33 144.1 96 76.0
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 5.8e-33 144.1 96 75.0
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 5.8e-33 144.1 96 81.2
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 5.8e-33 144.1 96 81.2
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 7.5e-33 143.7 96 80.2
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 9.8e-33 143.3 96 72.9
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 9.8e-33 143.3 96 75.0
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 76.0
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 71.9
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 1.3e-32 142.9 96 78.1
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.7e-32 142.5 96 78.1
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 2.2e-32 142.1 96 79.2
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 2.2e-32 142.1 96 79.2
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 2.9e-32 141.7 89 77.5
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 3.7e-32 141.4 96 70.8
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 3.7e-32 141.4 96 70.8
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 4.9e-32 141.0 96 70.8
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 4.9e-32 141.0 96 70.8
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 4.9e-32 141.0 96 71.9
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 4.9e-32 141.0 96 81.2
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 8.3e-32 140.2 96 68.8
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 1.1e-31 139.8 96 70.8
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 1.1e-31 139.8 96 70.8
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 1.1e-31 139.8 96 75.0
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.4e-31 139.4 89 76.4
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 1.9e-31 139.0 96 70.8
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 3.2e-31 138.3 96 70.8
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 3.2e-31 138.3 96 70.8
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 3.2e-31 138.3 96 70.8
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 3.2e-31 138.3 96 70.8
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 3.2e-31 138.3 96 70.8
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 3.2e-31 138.3 96 70.8
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 3.2e-31 138.3 96 72.9
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 4.1e-31 137.9 96 77.1
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 4.1e-31 137.9 96 76.0
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 5.4e-31 137.5 96 69.8
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 7.0e-31 137.1 96 70.8
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 7.0e-31 137.1 96 76.0
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.2e-30 136.3 96 69.8
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 2.0e-30 135.6 96 71.9
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 2.0e-30 135.6 96 74.0
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 2.0e-30 135.6 95 71.6
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 2.7e-30 135.2 96 75.0
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 1.3e-29 132.9 96 74.0
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 1.3e-29 132.9 96 72.9
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.7e-29 132.5 96 68.8
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.7e-29 132.5 96 74.0
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.3e-29 132.1 96 74.0
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 3.9e-29 131.3 96 70.8
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 3.9e-29 131.3 96 71.9
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 5.0e-29 131.0 96 66.7
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 5.0e-29 131.0 96 72.9
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 6.6e-29 130.6 96 72.9
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 6.6e-29 130.6 96 72.9
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 6.6e-29 130.6 95 66.3
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 1.9e-28 129.0 96 71.9
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.9e-28 129.0 96 69.8
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 2.5e-28 128.6 96 69.8
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 2.5e-28 128.6 96 70.8
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 4.3e-28 127.9 96 67.7
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 4.3e-28 127.9 96 67.7
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 4.3e-28 127.9 96 71.9
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 4.3e-28 127.9 96 69.8
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 4.3e-28 127.9 96 69.8
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 5.6e-28 127.5 96 68.8
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 7.3e-28 127.1 96 70.8
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 7.3e-28 127.1 96 68.8
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 9.5e-28 126.7 96 68.8
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 9.5e-28 126.7 96 68.8
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 1.6e-27 125.9 96 70.8
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 2.1e-27 125.6 81 75.3
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 3.6e-27 124.8 96 63.5
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.7e-27 124.4 96 68.8
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.7e-27 124.4 96 68.8
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.7e-27 124.4 96 68.8
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 4.7e-27 124.4 96 66.7
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 8.0e-27 123.6 96 68.8
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 2.3e-26 122.1 96 66.7
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 3.1e-26 121.7 96 63.5
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.1e-26 121.7 96 67.7
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 4.0e-26 121.3 96 65.6
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 8.9e-26 120.2 96 65.6
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 2.0e-25 119.0 96 64.6
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.3e-24 116.3 97 67.0
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.7e-24 115.9 97 67.0
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 8.3e-24 113.6 96 62.5
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 4.6e-22 107.8 69 76.8
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 4.6e-22 107.8 69 76.8
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 7.8e-22 107.1 96 54.2
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.3e-21 106.3 69 75.4
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 3.9e-21 104.8 72 70.8
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 5.1e-21 104.4 95 58.9
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 1.2e-19 99.8 96 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 1.6e-19 99.4 96 53.1
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 6.8e-18 94.0 69 62.3
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 2.0e-17 92.4 95 56.8
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 2.6e-17 92.0 69 60.9
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.7e-16 89.4 86 57.0
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 3.2e-15 85.1 52 78.8
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 3.0e-13 78.6 68 64.7
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 1.5e-12 76.3 98 46.9
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 5.6e-12 74.3 101 44.6
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 4.7e-11 71.2 102 42.2
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 8.1e-11 70.5 75 53.3
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 6.8e-10 67.4 107 37.4
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 1.3e-08 63.2 38 78.9
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 3.2e-07 58.5 39 74.4


User provided reference genes

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