Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2647 Trifolium pratense HOM05D005327 ORTHO05D006655 7.2e-36 153.3 73 100.0
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 1.5e-33 145.6 73 94.5
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 2.8e-32 141.4 73 91.8
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 5.0e-29 130.6 73 84.9
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 1.1e-28 129.4 73 79.5
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 9.4e-28 126.3 73 78.1
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 2.1e-27 125.2 73 78.1
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 4.7e-27 124.0 73 75.3
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 1.8e-26 122.1 69 82.6
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 6.8e-26 120.2 71 81.7
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 3.4e-25 117.9 73 75.3
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 3.7e-24 114.4 73 72.6
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 6.3e-24 113.6 70 74.3
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 6.3e-24 113.6 73 72.6
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 1.4e-23 112.5 73 71.2
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 1.8e-23 112.1 69 71.0
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.8e-23 112.1 73 72.6
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 2.4e-23 111.7 73 69.9
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 2.4e-23 111.7 73 69.9
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 2.4e-23 111.7 73 69.9
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 4.1e-23 110.9 73 69.9
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 7.0e-23 110.2 69 71.0
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 9.1e-23 109.8 70 74.3
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 9.1e-23 109.8 73 71.2
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 9.1e-23 109.8 73 69.9
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 1.2e-22 109.4 73 67.1
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.2e-22 109.4 73 68.5
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 1.2e-22 109.4 73 69.9
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 1.6e-22 109.0 73 69.9
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 1.6e-22 109.0 73 71.2
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 1.6e-22 109.0 73 71.2
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 1.6e-22 109.0 73 71.2
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 2.0e-22 108.6 70 68.6
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 2.7e-22 108.2 73 67.1
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 2.7e-22 108.2 70 71.4
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 5.9e-22 107.1 73 69.9
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 7.7e-22 106.7 73 67.1
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 1.0e-21 106.3 73 64.4
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 1.0e-21 106.3 69 73.9
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 1.3e-21 105.9 76 68.4
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 1.3e-21 105.9 73 65.8
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 1.7e-21 105.5 70 68.6
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 1.7e-21 105.5 73 65.8
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 1.7e-21 105.5 65 73.8
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 1.7e-21 105.5 76 67.1
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 2.3e-21 105.1 70 67.1
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 2.3e-21 105.1 70 67.1
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 2.3e-21 105.1 69 68.1
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 2.3e-21 105.1 69 69.6
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 2.3e-21 105.1 73 69.9
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 2.9e-21 104.8 67 71.6
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 2.9e-21 104.8 73 65.8
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 3.8e-21 104.4 67 70.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 8.6e-21 103.2 70 65.7
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 8.6e-21 103.2 70 65.7
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 8.6e-21 103.2 65 73.8
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 8.6e-21 103.2 67 73.1
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 1.1e-20 102.8 68 70.6
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 1.1e-20 102.8 68 70.6
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 1.5e-20 102.4 69 66.7
QL11p009810 Quercus lobata HOM05D005327 ORTHO05D006655 1.5e-20 102.4 73 63.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.9e-20 102.1 67 68.7
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 1.9e-20 102.1 65 72.3
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 2.5e-20 101.7 70 65.7
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 3.3e-20 101.3 73 63.0
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 3.3e-20 101.3 73 64.4
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 4.2e-20 100.9 79 60.8
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 5.5e-20 100.5 73 64.4
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 7.2e-20 100.1 73 61.6
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 9.5e-20 99.8 73 65.8
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 9.5e-20 99.8 65 70.8
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 2.1e-19 98.6 73 61.6
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.8e-19 98.2 79 59.5
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.8e-19 98.2 79 59.5
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 2.8e-19 98.2 70 62.9
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.8e-19 98.2 68 61.8
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 6.1e-19 97.1 73 60.3
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 1.0e-18 96.3 62 72.6
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 1.0e-18 96.3 62 72.6
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 1.4e-18 95.9 73 57.5
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 1.8e-18 95.5 68 64.7
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 1.8e-18 95.5 70 61.4
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 3.0e-18 94.7 69 65.2
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 3.0e-18 94.7 69 65.2
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 1.2e-17 92.8 71 59.2
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 2.6e-17 91.7 98 50.0
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 2.6e-17 91.7 71 62.0
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 5.7e-17 90.5 68 58.8
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 1.7e-16 89.0 64 64.1
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 3.7e-16 87.8 52 78.8
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 4.9e-16 87.4 66 60.6
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 1.1e-15 86.3 51 78.4
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 2.4e-15 85.1 52 75.0
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 5.4e-15 84.0 48 79.2
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 9.2e-15 83.2 55 69.1
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 2.7e-14 81.6 64 57.8
Sabra18G0112000 Salix brachista HOM05D005327 ORTHO05D006655 7.8e-14 80.1 63 61.9
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 1.0e-13 79.7 69 58.0
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 1.7e-13 79.0 38 94.7
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 3.3e-12 74.7 60 58.3
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 7.3e-12 73.6 68 45.6
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 6.1e-11 70.5 50 58.0
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 3.1e-10 68.2 65 47.7
arahy.Tifrunner.gnm1.ann1.TSV22Z Arachis hypogaea HOM05D026511 ORTHO05D038857 5.2e-10 67.4 45 66.7
SHI03098 Sapria himalayana HOM05D005327 ORTHO05D006655 5.2e-10 67.4 44 65.9


User provided reference genes

Program Settings